Peer Review History
| Original SubmissionFebruary 1, 2020 |
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PONE-D-20-02990 4-hexylresorcinol-induced protein expression changes in human umbilical cord vein endothelial cells as determined by immunoprecipitation high performance liquid chromatography PLOS ONE Dear Dr Lee, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please address the comments in the review, and note that substantial clarification, and additional experiments are required. We would appreciate receiving your revised manuscript by October 31, 2020. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Christina L Addison, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We suggest you thoroughly copyedit your manuscript for language usage, spelling, and grammar. 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If the PLOS editorial team finds any language issues in text that either AJE or Editage has edited, the service provider will re-edit the text for free. Upon resubmission, please provide the following: a) The name of the colleague or the details of the professional service that edited your manuscript b) A copy of your manuscript showing your changes by either highlighting them or using track changes (uploaded as a *supporting information* file) c) A clean copy of the edited manuscript (uploaded as the new *manuscript* file) 3. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This is an interesting study with potential, but needs some clarification in the methods, as well as additional experiments to be able to support the conclusions. Specific comments are provided in the attached document. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-20-02990R1 4-hexylresorcinol-induced protein expression changes in human umbilical cord vein endothelial cells as determined by immunoprecipitation high performance liquid chromatography PLOS ONE Dear Dr. Lee, Thank you for submitting your manuscript to PLOS ONE. Although the reviewers acknowledge the manuscript is substantially improved, they still feel certain issues remain to be resolved. Thus after careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please see reviewer comments and address outstanding issues as highlighted in their report. Please submit your revised manuscript by December 19, 2020. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Christina L Addison, Ph.D. Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This was a resubmission of a study that examines the effect of 4-hexylresorcinol (4HR) on human umbilical vein endothelial cells (HUVEC) protein and phospho-protein expression (227 in total) at three time points over a 24-hour period, using IP-HPLC. Protein expression in treated cells was compared to control (untreated) cells and significantly upregulated and downregulated proteins were identified. As these proteins belonged to specific functional groups, this allowed the authors to infer the impact of 4HR in modulators of various physiological processes, including angiogenesis, inflammation, etc. A similar study was previously performed in RAW 264.7 (virus-transformed macrophages), and the purpose of the current study was to investigate whether the effects in HUVEC are similar or different to those found in RAW 264.7 cells. The study generated a number of interesting observations of potential physiological impact (e.g., upregulation of pro-angiogenic factors, changes indicative of potential growth inhibitory and apoptotic effects, effects on key inflammation mediators, etc.), but there were some gaps in the initial submission, which made the manuscript unacceptable at the time. I specifically raised 8 major points that needed to be addressed. Authors fully or partially addressed points 1, 3, 4, 5, 6, 7 and 8. However, there are still major and minor concerns that need to be addressed. Major: 1. How does a 10 micrograms per mL concentration of 4HR compare to what a human being will be exposed to by tooth paste/cosmetic use or food consumption? Is this a physiologically relevant dose? This should have been addressed in the methods section. It was specified that it was a concentration which, when previously tested, showed “positive protein expression in different cells”; what does this mean? This need to be clarified in line 96 of the Material and Methods. In addition, the answer in relation to the physiological relevance of this dose is not convincing. It was argued that, although the dose employed in the present study is significantly larger that the dose achieved by cosmetic/food products used by humans, the effect in human can be cumulative. What is the concentration achieved in tissue in humans? I also disagree that a 24 hour treatment with a high dose (acute exposure) is similar to a cumulative effect of lower doses (chronic exposure). If there is some literature the authors could cite to address these persistent concerns, it will greatly enhance the meaning and applicability of their results. 2. The results of the immunocytochemistry of various molecules in Figures 2 and 3 show interesting and potentially relevant changes in subcellular localization of various proteins in HUVEC treated with 4HR, which become more obvious as the time increases. These were not mentioned or discussed. For instance, a change from predominantly nuclear to cytoplasmic seems to be happening for eIF2AK3 and LC3. Is this a valid observation? If this an artefact resulting from the lower magnification at which some images were taken in the 0h control as compared to the other time points? The magnification should be the same in all panels, and subcellular localization differences must be described in results and discussed later on. 3. Although the manuscript was reviewed and it has significantly improved, there are still some parts of the discussion that affirm mechanistic aspects that were not experimentally demonstrated. It is important to revise lines 632-634, 648-653, 654-655 to reflect the fact that results are only suggestive of the mechanism/processes mentioned in those lines but they do not represent a proof that they are actually happening. All this manuscript presents are correlations; the demonstration of the involvement of signalling pathways in specific phenomena requires systematic functional assays that were not performed. 4. Please revise the discussion related to the meaning of Western blot analysis of PARP-1 and Immunocytochemistry of caspase-3 and PARP-1. Increase in these proteins do not necessarily reflect apoptosis. You should have determined their cleaved counterparts, which are the actual markers of apoptosis. In fact, when we have used an antibody that recognizes both the full-length and cleaved form of these proteins, what we observed was a concomitant reduction in the full-length as the levels of the cleaved form went up. The molecular weight of PARP-1 is not shown in the Western blot, but based on the description of the antibody used (Material and Methods section) what is shown by the blots in Fig.4 is an increase in full-length protein. Minor: The whole manuscript will benefit from a revision of English grammar and style. Below are some suggestions related to this, missing information, or misleading information. Abstract 1. Line 30: change “than non-treated” to “as compared to non-treated”. 2. Line 31: Eliminate the word “Whereas” at the beginning of this sentence. 3. Line 34: switch “and had anti-inflammatory…” for “in a manner that suggest potential anti-inflammatory”. 4. Line 36: add the word “mediators” after “ER stresses”. 5. Lines 39-40: Eliminate “that is, HUVECs (endothelial cells) have strong regenerative potential for wound healing, while RAW 264.7 cells (macrophages) play a key role for inflammation”, and adjust punctuation accordingly. Introduction Needs a full revision of grammar and style. Materials and Methods 1. Line 89: concentration of a few growth factors in media is missing. 2. Line 96: not sure what “positive protein expression” means; please explain. 3. Line 109: change the word “immunohistochemical” to “immunocytochemical (ICC)”, as you immunolabelled cells and not tissue. Make sure to change it in the results section and in the figure legends as well. 4. Lines 113 and 121: specify whether antibodies used for PARP-1 and caspase-3 recognize the full-length or the cleaved form; modify the description of corresponding results (Figs. 2 and 4) accordingly Results 1. Line 256: “condensed” is not an appropriate description of the changes observed; please revise 2. Line 268: eliminate caspase-3 from the result description, as it was not tested by Western blotting. Also eliminate in Figure legend (line 278). Alternatively, if you have a blot for it, then include. 3. Fig. 4: Add MW of proteins to each blot. 4. Line 270-272: confusing sentence; please rewrite. Discussion 1. Line 674: Not sure what the authors mean by “crosstalk between TGF-beta and SMAD signalling”. There is no crosstalk between TGF-beta and SMAD signalling. SMAD signalling is canonically activated by TGF-beta. 2. Line 703: switch “produce a strong angiogenic effect by upregulating” to “upregulated”. 3. Line 714: please revise grammar in the following sentence “although 4HR more upregulated some growth factors and stimulated downstream of RAS signaling in HUVECs than in RAW 264.7 cells”. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 2 |
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4-hexylresorcinol-induced protein expression changes in human umbilical cord vein endothelial cells as determined by immunoprecipitation high-performance liquid chromatography PONE-D-20-02990R2 Dear Dr. Lee After reviewing your extensive edits in response to reviews, I am pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Christina L Addison, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-20-02990R2 4-hexylresorcinol-induced protein expression changes in human umbilical cord vein endothelial cells as determined by immunoprecipitation high-performance liquid chromatography Dear Dr. Lee: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Christina L Addison Academic Editor PLOS ONE |
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