Peer Review History

Original SubmissionFebruary 18, 2020
Decision Letter - Vincenzo De Luca, Editor

PONE-D-20-04570

The side effect profile of Clozapine in real world data of three large mental health hospitals

PLOS ONE

Dear Dr. Iqbal,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Aug 13 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

We look forward to receiving your revised manuscript.

Kind regards,

Vincenzo De Luca

Academic Editor

PLOS ONE

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. Please note that PLOS ONE has guidelines on software sharing (https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-software).

Accordingly, we encourage you to make the code for the algorithm described in your manuscript publicly available, if it has not been published in full previously.

3. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions.

In your revised cover letter, please address the following prompts:

a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent.

b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories.

We will update your Data Availability statement on your behalf to reflect the information you provide.

4. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Partly

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Iqbal et al. have undertaken the evaluation of side effect profile of clozapine using patient notes from three different hospitals in the UK.

Such endeavors are typically implemented via reaching large enough samples size. In addition, data should be generalizable, and therefore replication studies in an independent cohort are usually conducted to ensure clinical value. Replication also serves as a test of reproducibility of obtained findings. In the current study, authors used de-identified Electronic Health Records and included notes from 2,835 patients admitted into three mental health trusts in the UK. Side effects of clozapine were monitored for 3 months after the initiation of the medication. It was shown that most common side effects during 3-month period were relatively non-specific: sedation, fatigue, agitation, dizziness, hypersalivation, weight gain, tachycardia, headache, constipation, and confusion. To search for discrepancy between obtained findings and established side effect profile of clozapine, authors compared their data with the SIDER database. For most side effects, numbers were more or less similar, but several unexpected results appear to stand out (described in detail in a following paragraph). Statistics seems to be performed appropriately.

Regarding significance, clozapine is a last resort antipsychotic commonly used in patients with refractory SCZ who failed 3 trials with different antipsychotics. Clozapine is notorious for its side effect profile. Among most feared side effects are agranulocytosis, weight gain, seizures, myocarditis, and QT prolongation, all of which requiring careful monitoring. Even though screening of patient notes is generally deemed inferior to established follow-ups on clinical trials such as FAERS etc. (in part due to lack of consistency and absence of clearly set evaluation criteria), blatant discrepancies between established numbers and numbers in routine clinical practice are typically visible. Such discrepancies might be of clinical significance if, for instance, there are new side effects or frequency of established adverse reactions is different, as it may suggest additional or different monitoring strategies. Authors obtained some interesting findings. For example, it was shown that weight gain occurred mostly during the first month, a phenomenon which may deserve further investigation. Incidence of insomnia appeared to be less than previously thought. Furthermore, number of patients who complained of dry mouth and/or blurred vision was less suggesting that anticholinergic effects of clozapine could have been overestimated. Authors also detected higher incidence of diarrhea which is also suggestive of relatively weak anticholinergic activity of clozapine. Of note, agitation was shown to be more prevalent than previously shown. Less incidence of hypotension and dyspepsia may represent notable findings as well. Also, more precise numbers were obtained for hypersalivation and weight gain. Some of these data may have a potential to shift the emphasis in monitoring. Reviewer would select the weight gain (which was shown to be most prominent during first month) and higher incidence of agitation as deserving a follow-up investigation. Different numbers were also obtained for confusion, but confusion is somewhat subjective criterion, so that these data should be interpreted with caution.

Reviewer has several concerns, though. The biggest concern is the lack of a replication cohort. As mentioned in a previous paragraph, in case of confusion as well as other subjective side effects (such as insomnia and dyspepsia), there might be a lot of discrepancies between departments and hospitals, as criteria for subjective side effects may differ among providers and specialties. Furthermore, there is a possibility of Berkson bias, as it is unclear to what extent data obtained in the UK are generalizable. It has been known that genetic architecture plays an important role in pathogenesis of psychotic disorders as well as in pharmacodynamics of clozapine, and it is not unlikely that obtained data may not be generalizable and/or replicated. Second, authors may want to clarify why 3-month period was selected for observation. Among most clinically significant side effects are agranulocytosis, myocarditis, and seizures, and these effects may take longer to develop.

There are also few minor comments. To what extend it is OK to use SIDER database as the only reference? The latest version of SIDER (4.1) was released in 2015, and data on side effects of clozapine listed there might be somewhat outdated. Could results be compared to an additional database? Furthermore, Table 2 appears to be redundant, numbers from this table likely could be given in the text in parentheses. Authors also may want to describe statistics in a more detail, especially how adjustments to potential confounders were made. Figures 1 and 2 seem to be redundant, and authors may consider removing them.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 1

Dear Reviewer,

We hope that we have addressed all of the reviewer's’ concerns and feel that the paper has been substantially improved. Please see the attached copy of manuscript labeled ‘Revised manuscript with Track Changes’ and revised paper without track changes.

Kind Regards

Ehtesham Iqbal

Attachments
Attachment
Submitted filename: Response to reviewers.docx
Decision Letter - Vincenzo De Luca, Editor

The side effect profile of Clozapine in real world data of three large mental health hospitals

PONE-D-20-04570R1

Dear Dr. Iqbal,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Vincenzo De Luca

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: (No Response)

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Formally Accepted
Acceptance Letter - Vincenzo De Luca, Editor

PONE-D-20-04570R1

The side effect profile of Clozapine in real world data of three large mental health hospitals

Dear Dr. Iqbal:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Vincenzo De Luca

Academic Editor

PLOS ONE

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .