Peer Review History
| Original SubmissionApril 29, 2020 |
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PONE-D-20-12498 Dynamics in the Sakaguchi-Kuramoto Model with bimodal frequency distribution PLOS ONE Dear Dr. Guo, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Sep 12 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Per Sebastian Skardal Academic Editor PLOS ONE Additional Editor Comments: Dear Dr. Gao, First, thank you for submitting your work to PLOS Ones and thank you for your patience through this difficult period. The review of your work has been delayed due to a number of Referees inability to submit reviews in these turbulent times. Ultimately, we have decided to proceed initially with the one report that we currently have on hand. We invite you to resubmit your work once you have responded to each of the Referee's comments, provided below. Best, Per Sebastian Skardal Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We suggest you thoroughly copyedit your manuscript for language usage, spelling, and grammar. If you do not know anyone who can help you do this, you may wish to consider employing a professional scientific editing service. Whilst you may use any professional scientific editing service of your choice, PLOS has partnered with both American Journal Experts (AJE) and Editage to provide discounted services to PLOS authors. Both organizations have experience helping authors meet PLOS guidelines and can provide language editing, translation, manuscript formatting, and figure formatting to ensure your manuscript meets our submission guidelines. To take advantage of our partnership with AJE, visit the AJE website (http://learn.aje.com/plos/) for a 15% discount off AJE services. To take advantage of our partnership with Editage, visit the Editage website (www.editage.com) and enter referral code PLOSEDIT for a 15% discount off Editage services. If the PLOS editorial team finds any language issues in text that either AJE or Editage has edited, the service provider will re-edit the text for free. Upon resubmission, please provide the following:
3. Thank you for stating the following in the Acknowledgments Section of your manuscript: "This work is supported by National Natural Science Foundation of China under Grants No. 11575036 and No. 11805021, and BUPT Excellent Ph.D. Students Foundation under Grant No. CX2019138." We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: "The author(s) received no specific funding for this work." [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors study and report the bifurcation structure of the Sakaguchi-Kuramoto model with bimodal distribution. The work is a natural extension of Martens et al., PRE 2009 that allows for asymmetric solutions and includes a phase shift parameter \\beta. The first set of results are obtained by increasing \\beta from zero, and examining the nature of the equilibrium and limit cycle solutions. In particular, the changes that occur in the two-dimensional bifurcation diagram are presented. The second set of results involve the "revival" of the incoherent state. The authors consider various ways to break the symmetry of the bimodal natural frequency distribution. They find parameter space regions where the stability of the incoherent state goes from stable to unstable to stable again by varying one parameter. In general, the work appears to be largely correct and interesting. However, there are a few problems with citations and terminology, and the exposition of the results section should be improved. First, this work is so closely related to Martens et al. (2009) -- Ref. 35 in the manuscript -- that it should be placed explicitly in that context. Specifically, Martens et al. (2009) should be introduced and cited by name in the Introduction of this manuscript (the way that many other references are cited there). The results of Martens et al. (2009) should be discussed, and the relationship of the authors' work to that reference described. Second, the authors refer to pitchfork bifurcations of the incoherent state (i.e., the origin). Pitchfork bifurcations involve one equilibrium transitioning into three with a change of stability of the original equilibrium. In the system studied, the origin (which has pairs of degenerate eigenvalues) transitions into two equilibria. The authors mention that the apparently missing equilibrium corresponds to an "unrealistic" solution with a negative values of the absolute values of z1 and z2. The authors also claim that other publications (their refs. 35 and 36) that have identified these bifurcations of the incoherent state as (degenerate) transcritical bifurcations are wrong. If the authors want to say this, then they need to establish their claim by providing the relevant details. If I remember correctly, one way to view the bifurcation of the incoherent state is to consider two coincident equilibria existing at the origin (due to the degeneracy). At the transcritical bifurcation, these exchange stability and the stable one one migrates away from the origin. Have the authors examined the leading-order nonlinearity? For the normal forms of the transcritical and pitchfork bifurcations, these are quadratic and cubic, respectively. Third, the readability of the manuscript would be vastly improved if several large paragraphs were split into smaller paragraphs as I suggest below. I also include in the following list several other corrections. Please find a logical way to break the second paragraph of the introduction (lines 29-68) into smaller paragraphs. Line 141: Please confirm if you want "always not" or "not always" here. These have very different meanings. Line 150: till --> until Line 156: conjugated complex --> complex conjugate Line 162-3: the reference to the panels b and c in Fig. 2 is incorrect. The paragraph on page 7 is hard to read. It would be very helpful for the reader if this text is split into multiple paragraphs as follows: Line 161: begin a new paragraph with "Secondly, we consider...". Line 168: begin a new paragraph with "The third parameter...". Line 175: begin a new paragraph with "Using [the] above analysis, ...". Insert "the" as shown. Line 179: Join this text to the (new) preceding paragraph. In the first line of the caption of Figure 1, it would be helpful if "4\\omega_0/K" were replaced with "\\omega_0'=4\\omega_0/K". This would help the reader connect the discussion in the text, which uses \\omega_0', to the Figure. Please make similar adjustments to the other figures. Lines 182-183: Regarding the second point mentioned here, the unstable saddles that arise from curve SN2 have r1 != r2. That is why it was not reported in Martens et al. (2009); they only considered solutions with r1 = r2. Please clarify this point. Line 184: Start a new paragraph at "In Fig 3(b)". Are the wiggly lines in the insets in Fig. 3 sample trajectories? These are confusing. Line 189: The sentence that begins "Now it is clear...": This claim is not clear from looking at Figure 3. Line 192: New paragraph at "Compared with...". The contradictory statements in lines 198-200 are confusing. What are you trying to say? Please reword. Similarly, the sentences in lines 210-212 contradict each other. I don't understand what the authors want the reader to see in Figure 4. Figure 5 caption: change "sparse shadow region" to "shaded region". ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-20-12498R1 Dynamics in the Sakaguchi-Kuramoto Model with bimodal frequency distribution PLOS ONE Dear Dr. Guo, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. In particular, please attend to Reviewer #2's comments. Please submit your revised manuscript by Nov 28 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Per Sebastian Skardal Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have addressed my concerns. Ambiguities have been removed and the English is now sufficiently intelligible. Reviewer #2: The authors of the manuscript “Dynamics in the Sakaguchi-Kuramoto Model with bimodal frequency distribution” investigate the dynamics of a population of phase oscillators whose natural frequency terms are drawn from a bimodal distribution. The coupling between oscillators is global and occurs via the sine of their pairwise phase differences. A phase lag parameter, or frustration parameter, is added, which leads to a bimodal Kuramoto-Sakaguchi model. The model in this particular form and with respect to asymmetric frequency distributions has not been analyzed in the literature, yet. Moreover, the authors report the “revival” of the incoherent state: when increasing a bifurcation parameter, the stable incoherent state first becomes unstable and later on stabilizes again. The collective behavior of the system is studied following the Ott-Antonsen ansatz, which allows for deriving analytically tractable low-dimensional dynamics of the Kuramoto order parameter. Here, the system consists of three coupled ordinary differential equations, whose bifurcation structure is investigated with analytic and numerical techniques. The model is well introduced by putting it into a larger context, and also by referring it to directly related literature, which makes it interesting to the readership of PLOS ONE. Although the here-reported form of the Kuramoto-Skaguchi model is new, the mathematically sound results for the symmetric case, which is central to this manuscript, can be anticipated from Martens, Bick and Panaggio (Chaos 26, 094819, 2016) and Refs. 20, 29, when taking into account that there is an equivalence between the bimodal formulation and a two-coupled-population formulation of coupled phase oscillators as established, e.g., in Ref. 30. The manuscript can present an important additional contribution to the field if, in a revised version, the authors can explicate whether the phase lag parameter \\beta and the heterogeneity parameter \\Delta have differential effects on the collective dynamics. The novelty of this manuscript is the impact of the asymmetric bimodal distribution on the revival of the incoherent state, which unfortunately is not yet worked out thoroughly. Since similar revival results have been obtained by Omelchenko and Wolfrum in Ref. 33 for unimodal frequency distributions, the manuscript can significantly be improved when the authors discuss in more detail the differences and similarities with their work and that by Omelchenko and Wolfrum. If these two concerns above can adequately be addressed in a revised version, I can happily support publication of the manuscript in PLOS ONE. Further points that should be addressed in a revised version of the manuscript: 1) As to the presentation of results, the authors should clarify why unstable solutions and their bifurcations (as in Figs. 1, 2, 3 and 4) are studied extensively. As their numerical analysis attains large attention through Figs. 1 and 2, the reader is misled in that unstable solutions seem to be crucial. But I doubt that they have any real effect on the dynamics of the population activity [apart from the SN2 curve in Fig. 3b between the CP and TB points]. 2) The presentation of the resulting dynamical regimes appears unclear: why are the sub-order parameters r_1 and r_2 the important properties? The insets in Fig. 3 suggest that r_1 and r_2 really are the central properties, but why they are of interest, does not become clear. And why is not the global order parameter Z characteristic for the network dynamics? 3) The insets in Fig. 3 are hard to understand. A more intuitive explanation, and/or schematics of the global states, would be helpful for the reader. Maybe the layout of inset figures can be changed to that used in Bick, Martens and Panaggio (Chaos 2016, Chaos 2018). 4) I don’t understand what Fig. 4 adds to the manuscript. If the purpose is to highlight how beta changes the bifurcation diagram, then there are at least two better options: a. Add more bifurcation diagrams similar to Fig. 3 for different choices of beta. b. Make Fig. 3b 3-dimensional by adding a beta-axis. 5) Line 220: Please start a new subsection in order to distinguish the parts using a symmetric versus an asymmetric distribution, respectively. 6) In Fig. 5c, \\omega_0 takes on negative values, but since it is considered to be half the distance between the peaks of the bimodal frequency distribution, how can it be negative? Please clarify 7) In the Conclusion, line 257, please enumerate here your main findings in which way (how) beta affects the dynamics. Moreover, it would helpful to show whether beta has any differential effects compared to the other important parameter \\Delta because, in general, both prevent the system to fully synchronize. In line 211 the authors already point to the counter-intuitive phenomenon that close to 4\\Delta = K, a larger frustration parameter \\beta “tend[s] to destabilize the incoherent state”, but the mechanism why this is so remains unclear. 8) Line 259: what are these conditions for better observing the revival? Please write them out here explicitly and, perhaps, the authors can also elaborate here on their hypothesis in lines 248/249 ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Dynamics in the Sakaguchi-Kuramoto Model with bimodal frequency distribution PONE-D-20-12498R2 Dear Dr. Guo, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Per Sebastian Skardal Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-20-12498R2 Dynamics in the Sakaguchi-Kuramoto Model with bimodal frequency distribution Dear Dr. Guo: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Per Sebastian Skardal Academic Editor PLOS ONE |
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