Peer Review History
| Original SubmissionAugust 28, 2020 |
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PONE-D-20-27056 The 1B vaccine strain of Chlamydia abortus produces placental pathology indistinguishable from a wild type infection PLOS ONE Dear Dr. Caspe, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please provide a point by point response to each reveiwer's concerns with appropriate changes in the manuscript. Please submit your revised manuscript by Nov 21 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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[Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This is a well written and interesting article. My principal comment is that I would like to see a little more balance in the discussion. The live vaccine has been shown in controlled and field studies to be effective and useful (Rodolakis et al., 1983; Chalmers et al., 1997). It is clear from this article and other work that the vaccine stain is not as attenuated as one would like and the authors rightly point out the need to consider transmission to naïve ewes and possibly also to pregnant humans. However, the evidence presented here does not show or purport to show that the vaccine strain is as virulent as a standard field strain. Therefore the vaccine may still have a role in control of this disease, while we await a better commercial vaccine. There are several minor corrections required as listed below and indicated in the attached pdf file. General comments: Please refer to the ‘trophoblast cells’ or the ‘trophoblast layer’ rather than referring to it as the ‘trophoblast’. There is some repetition of results in the discussion, please edit accordingly to make the discussion more concise. Specific comments: Line 109: ‘secondary bacterial infection’ could these infections not also be primary bacterial infections, does it matter. Please delete the word ‘secondary’. Lines 137 – 139: Can you supply a reference for the cultivation method employed showing that the method described is as sensitive as other standard methods. It is unusual not to include antimicrobials and an antimetabolite such as cycloheximide when cultivating chlamydiae. Lines 144 to 164: The section “Placenta sampling….’ should come before ‘Bacteriological isolation’. Lines 148 -151: Please clarify if the mixing of the positive cotyledon with negative cotyledons occurred before DNA extraction or after. Line 166: What are the ‘isolated organisms’ referred to here ?, details please. Lines 423 – 426: Please supply a primary source of the information stated here about the temperature that the vaccine strain 1B grows at (ref 3 is not suitable). The best source I could find was Rodolakis (1983, Infection and Immunity, 42:525-530) who stated that the optimum temperature for strain 1B in McCoy cells was 38ºC. Lines 438-439: Need to re-word. It is a limitation of the study that you were unable to follow the lambs during the neonatal period. As this sentence is written it suggests that you missed other ill effects of the vaccine strain – you do not have the evidence to say this or even to imply it. Line 452: Please supply a reference for this statement about “birth of an ‘apparently normal’ live lamb”. Lines 460 – 462: Delete, this is repetition. Lines 480 to 482: This needs re-wording. It is a very significant and generalised conclusion without sufficient data to back it up. Needs to be a lot more circumspect. Line 489: qPCR will never detect the presence of antigen, please correct. Lines 504-505: please supply a photo with arrows indicating these intracytoplasmic inclusions. Lines 533 - 536: Some further discussion of the possible reasons/factors why the commercial vaccine has controlled EAE (despite its limitations) in many affected flocks is desirable. Reviewer #2: In this study, Sergio et al. investigated the demonstrate that the 1B strain of Chlamydia abortus can infect the placenta, and produced typical EAE placental lesions that are indistinguishable from those found in wt infected animals. The manuscript is well written. Overall, the conclusion is supported by the performed assays. One of the main tools used in this study was PCR-RFLP used to discriminate the 1B strain from the wild-type isolate (S26/3). While PCR-RFLP was used often to differentiate similar targets, the authors are highly encouraged to provide the DNA sequencing data (PCR products) from these two 1B samples of your work, from the vaccine, and from the S26/3 controls. DNA sequencing is so convenient and powerful nowadays, and it should be very easy for the authors to provide the DNA sequencing data of your work, and then compare these nucleotide sequences from your work with those in the GenBank. This reviewer is not sure which regions are the target of the PCR/ PCR-RFLP used in this study. The BLASTn from NCBI showed that there are 99.83% similarity between 1B and S26/3 in their membrane protein D gene (similarity: 4580/4588; zero gap). In this study, placentas were collected from 75 ewes. The ewes looked healthy, but it remained unknown if the ewes carried Chlamydia abortus or other pathogens. After the vaccination of 1B vaccine, did abortion happen to any of those vaccinated ewes? Your Abstract reads: "...provided strong evidence that the 1B strain is not attenuated and can infect the placenta causing disease in some ewes..." You need more evidence to support this statement. In this work, 2/173 placentas were found positive for 1B (clinical abortion happened?). Experimental infection with C. abortus might resulted in 50% of abortion? The Abstract and even the title needs to modified to reflect the findings supported by your study. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. 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| Revision 1 |
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The 1B vaccine strain of Chlamydia abortus produces placental pathology indistinguishable from a wild type infection PONE-D-20-27056R1 Dear Dr. Caspe, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Deborah Dean, M.D., M.P.H. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: N/A ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: This reviewer appreciates the hard work from the authors to address the questions. It is my opinion that DNA sequencing MUST be performed to make the conclusion solid in this study. I guess we have to agree that DNA sequencing is most powerful and definite tool to determine the DNA sequence. Also, the DNA sequencing is so cheap and rapid in considering that you have performed PCR and PCR products are available for nucleotide sequencing. FYI: if we search under www.pubmed.gov, we see 926 hits using the keywords "Chlamydia DNA sequencing", and see only 28 article since 1996 using the keywords "Chlamydia, PCR-RFLP". PCR-RFLP can be problematic with samples other than DNA from pure isolates. In contrast, DNA sequencing is so convenient, cheap, powerful, and provides definite conclusion. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No |
| Formally Accepted |
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PONE-D-20-27056R1 The 1B vaccine strain of Chlamydia abortus produces placental pathology indistinguishable from a wild type infection Dear Dr. Caspe: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Deborah Dean Academic Editor PLOS ONE |
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