Peer Review History
| Original SubmissionAugust 24, 2020 |
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PONE-D-20-26375 Systematic review and meta-analysis of the prevalence of common respiratory viruses in children < 2 years with bronchiolitis reveal a weak role played by the SARS-CoV-2 PLOS ONE Dear Dr. Njouom, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Notably, it is especially important to carefully address the comment of reviewer 2, who flagged that the studies reviewed in your manuscript had included their patients before the start of the COVID-19 pandemic. Therefore, I agree with the reviewer that it is crucial to remove all reference to SARS-CoV-2 from the title, abstract and conclusions. Please submit your revised manuscript by Nov 30 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Rik L. de Swart, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2.Thank you for stating the following financial disclosure: [The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.]. At this time, please address the following queries:
Please include your amended statements within your cover letter; we will change the online submission form on your behalf. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This is a reasonably well conducted systematic review which highlights COVID19 as not being a virus that causes bronchiolitis. I have minor suggestions to improve readability: 1. introduction section: "causes" not "cause" - Bronchiolitis infection is included among the leading causeS... 2. page 14: "reports have also highlighted HBoV involvement in life-threatening in children with severe respiratory infections" needs grammatical correction - for example it could be changed to "reports have also highlighted HBoV involvement in life-threatening respiratory illness in children". An additional reference to this section could be 10.1111/jpc.14587 , which describes the case of a young boy with life-threatening plastic bronchitis and only bocavirus on PCR testing as a potential cause. Reviewer #2: Dear authors, I have reviewed the manuscript (PONE-D-20-26375) entitled “Systematic review and meta-analysis of the prevalence of common respiratory viruses in children < 2 years with bronchiolitis reveal a weak role played by the SARS-CoV-2”. This is a Systematic review and meta-analysis study conducted on 51 studies in patients with Bronchiolitis. Although it doesn’t add something new to the literature, I believe that such studies in different periods from different regions are useble for clinical approaches to reflect that regions characteristics of the diseases. There are some issues that might improve the manuscript which are as follows; 1. Although the English style is not so bad, the languge should be checked by a native English speaker. 2. There has been added a little information at the part of “Discussion” and has not given newer information about bronchiolitis and lower respiratory tract infection with COVID-19. Some information should be added and The discussion part can be maked more attractive part for the readers. During reading the article; it should not to be boring. Reviewer #3: The authors have carried out a rigorous literature search and collected data on viral testing for bronchiolitis in young children over 2 decades. However, it is markedly of note that all these children are being referenced as recruited between 1999-2017. The SARS-COV-2 was only describe din 2019 and testing became available in 2020. So it is unclear how any reference to SARS-COV-2 is being made at all in the paper? If indeed I am not misunderstanding the data being presented, and all the children discussed were enrolled between 1999-2017, then there is gross overstatement of the name of SARS-COV-2 in this paper. It is mentioned in the title, in the abstract and in the results. "weak role played by SARS-COV-2" "no study reported presence of SARS-COV-2" are all misleading statements if none of the studies actually enrolled any patients since the pandemic and the novel SARS-COV-2 has been described. This paper would be more acceptable if it was discussed for what it actually was, a review of common respiratory viruses in children under 2 with bronchiolitis in the pre-pandemic era. To that end, indeed a lot of work has been applied and that is the only work that should be discussed. Any unnecessary references to SARS-COV-2 or conclusions/results thereof should be removed. - Please remove SARS-COV-2 from titles and from abstract since your study cannot discuss it at all. Other language errors requiring correction - Line 3: "among the leading causes..." Line 10: reword "the most common... ?virus ?pathogen....include" Lines 18-3-: Please remove all reference to SARS-COV-2 or explain better why your results, with patients last enrolled in 2017 have any relationship to the pandemic of 2019-20. - Line 71-72: "data of the evaluation of the study quality"? unclear meaning, please reword. - Line 160-161: unclear what the sentence " Therefore the recent widespread us of PCR....." means -Line 170-171: have also highlightes HbOvinvolvement in life threatening in children....?" unclear menaing? missing words? - Line 205-207 sentence starting with "Increase us eof health resources..." unclear meaning, seems either rincomplete or confused. Please clarify or reword. - Line 212-214 : again unclear menaing, what conclusion do the authors wnat to draw here? -Line 216: one drawback is the very small number of children actually being discussed in the studies that eventually met criteria. Its only 51 globally, over 20 years, for a condition as ocmmon as bronchiolitis and these common viral pathogens. So consluions are indeed hard to draw form such a small sample. - Line 233-234: language incorrect please reword. Line 241-244: Unclear meaning...are the authors suggesting that studies need ot be conducted on viral coinfections and their effect on the severity of bronchiolitis in order to reduce the use of viral testing in children with bronchiolitis? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-20-26375R1 Systematic review and meta-analysis of the prevalence of common respiratory viruses in children < 2 years with bronchiolitis reveal a paucity of data related to SARS-CoV-2 PLOS ONE Dear Dr. Njouom, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The revised manuscript has adequately addressed the majority of the comments of the reviewers. However, I do not agree with your response to the comment of reviewer 3, which was reiterated in my decision letter. The COVID-19 outbreak was declared a pandemic in March 2020, followed by several months of lockdowns and high pressure on global health research infrastructures. Therefore, the argument that the search for articles was continued until August 2020 does not justify interpretation of the results of this systematic review in the context of the COVID-19 pandemic. All available reports were based on pre-pandemic data. PLOS ONE explicitly considers systematic review papers for publication, as described in the submission guidelines (https://journals.plos.org/plosone/s/submission-guidelines#loc-systematic-reviews-and-meta-analyses). In my opinion, this section is of crucial importance: “A systematic review paper, as defined by The Cochrane Collaboration, is a review of a clearly formulated question that uses explicit, systematic methods to identify, select, and critically appraise relevant research, and to collect and analyze data from the studies that are included in the review.” Based on this, I cannot accept your objective, as stated in the abstract: “This systematic review and meta-analysis was initiated to clarify the prevalence of respiratory viruses in children with bronchiolitis in the coronavirus disease 2019 pandemic context.” It will be impossible to perform a systematic review with that aim until well into next year. I therefore ask you to revise the manuscript and remove all reference to the COVID-19 pandemic from the title, abstract, introduction and results section of your manuscript. I believe that it would be justified to add a paragraph at the end of the discussion in which you discuss the potential impact of the COVID-19 pandemic on bronchiolitis, and the necessity to collect data on this topic. Moreover, please make sure that PRISMA flow diagram is included as Fig 1 and the PRISMA checklist as supporting information, as specified in the instructions for authors. Finally, make sure that your figure TIF files are correctly uploaded to the system, as the current PDF file reports file errors and does not display your figures. Please submit your revised manuscript by Dec 12 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Rik L. de Swart, Ph.D. Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Systematic review and meta-analysis of the prevalence of common respiratory viruses in children < 2 years with bronchiolitis in the pre-COVID-19 pandemic era PONE-D-20-26375R2 Dear Dr. Njouom, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Rik L. de Swart, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-20-26375R2 Systematic review and meta-analysis of the prevalence of common respiratory viruses in children < 2 years with bronchiolitis in the pre-COVID-19 pandemic era Dear Dr. Njouom: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Rik L. de Swart Academic Editor PLOS ONE |
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