Peer Review History
| Original SubmissionOctober 28, 2020 |
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PONE-D-20-33931 Density responses of lesser-studied carnivores to habitat and management strategies in southern Tanzania’s Ruaha-Rungwa landscape PLOS ONE Dear Dr. Hardouin, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 10 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Additional funding was awarded to CS for this research from National Geographic Society Early Career Grants (https://www.nationalgeographic.org/funding-opportunities/grants), Cleveland Metroparks Zoo Africa Seed Grants (https://www.clevelandmetroparks.com/zoo), Chicago Zoological Society Chicago Board of Trade (CBOT) Endangered Species Fund (https://www.czs.org/Chicago-Zoological-Society/Conservation-Leadership/CBOT-Endangered-Species-Fund), and Pittsburgh Zoo & PPG Aquarium Conservation & Sustainability Fund (https://www.pittsburghzoo.org/conservation/). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 4. We note that Figure 1 in your submission contain map images which may be copyrighted. 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If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. The following resources for replacing copyrighted map figures may be helpful: USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/ The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/ Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/ Landsat: http://landsat.visibleearth.nasa.gov/ USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/# Natural Earth (public domain): http://www.naturalearthdata.com/ [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Hardouin et al. This paper is better than it might appear. As a comparison of three sites, with no replicates, one might dismiss it as a pedestrian. As an ecological study, it is. What makes it important is its methods. The authors use bycatch — and I just love their use of that term — the incidental records of species in a study of leopards. There are now surely thousands of camera trap studies aimed are finding large mammals that, often enough, have other species walk by. These other species are interesting, important, and sometimes poorly known. They are grist to this paper’s mill and good for the authors. Second, the methods of setting up the trapping grid and identifying the individuals also provide a model for other studies. I see a lot of camera trap studies to review: this is a good one. Oh, but the English is awful. I suspect the senior author is not a native speaker, and so has an excuse. The other authors need to be ashamed. I have rarely seen so many sentences written in the passive voice. Overall, a basic, unpretentious paper that is useful contribution to a genre that will assume importance with the expanding number of papers about camera trapping. Reviewer #2: Specific Comments: Lines 21-22: Is ‘less charismatic’ necessary? Also, the use of body size adjectives is relative. What is large and what is smaller? The species listed could easily be viewed as large carnivores in many systems. Lines 31-33: It isn't clear here what the 'respectively' is referencing. Is it the 3 sites listed above in the order they are listed? Line 46: The use of camera traps is not novel. There are many, many published studies that have used this technique. I wouldn’t suggest it as a rationale or novelty of the study here. Lines 85-91: Is this difference in geography important? How so? Is the distinction of just these 2 countries important? Do you expect differences compared to other parts of the geographic range for this species? Justification for study seems tenuous and not convincing given how it is presented. Lines 109-110: The technique is not novel. Based on the rationale here and the issue of geographically incomplete data sets, the need for study is questionable, as presented. Lines 155-156: So no movement in or out over 90 days. This doesn't seem realistic. Lines 161-163: What is the significance here on distance? Was independence of camera trap being sought? Lines 180-189: So the entire 90 days was extent of the capture history matrix? How wouldn't there be deaths, immigration and emigration occurring across such a long time period? Thus, if this population is actually open, why not use a Jolly-Seber model to assess population numbers? How certain was the individual identification? Any estimate of your error rate? Lines 205-206: Any concern with count data and overdispersion of data? Lines 228-232: I don't recall any mention of diagnostics used to identify gender in the Methods. Any biases and how were they minimized? Lines 243-245: AIC weights range from 0 to 1 but the values that are presented in S5 Appendix range from 0 to >71. The delta AICs are not calculated correctly either, at least given the AICc values presented. Did the authors interpret results based on the values presented? If so, I would question the results and interpretations. Also, if models were similar in terms of the AIC weight, were the parameters and their SE evaluated to see if a model had uninformative variables (sensu Arnold 2010. Journal of Wildlife Management)? Lines 343: I don't understand the point of this first sentence. Lines 345-348: How so and what does this mean to be 'compatible with the home range'? Lines 354-356: Does this conclusion follow based directly on the design of the study and analyses? I didn't see this as an objective in the Introduction. Reviewer #3: This paper used photos of three mesocarnivores, aardwolf, serval, and striped hyena, from a previous camera trap study of leopards along with spatial capture-recapture modeling methods to estimate their population abundance/density in Tanzania. The authors set up the need for the study well by explaining the conservation challenges for these medium-sized carnivores in that they are all facing a variety of threats but do not receive the same conservation attention as charismatic megafauna (like lions). Because the three species involved have patterned coats with unique markings among individuals, the authors developed capture histories for use in the modeling (included in the supporting information). Using SECR, they estimated population density for each of the three species while addressing model assumptions and testing the potential influence of the camera flash and station location on detection. Their results provide density estimates for the three species and are given in context to habitat, previous density estimates, and conservation concerns. Overall, I thought the paper was really well written and the spatial capture-recapture modeling was thorough and addressed the important assumptions involved in using this approach. The density estimates all appear realistic given the species and habitat and were effectively compared to other published results. I also appreciated the discussion of the data in the context of conservation. There are two points for clarification that would strengthen the paper. First, it would be helpful to add details to the methods for identification of individual animals using the pelage patterns. Correctly identifying unique individuals is essential for their use of capture-recapture analysis. When describing their identification methods, the authors cite a paper from 1995 that manually identified 10 individual tigers so I assume that is the method they also used but it is unclear. The supplemental materials include images of each species with polygons around markings but there’s no caption to explain whether this was done by an observer or software like Hotspotter. It would be helpful to include more of a description about how the individuals were identified and ID was confirmed. Secondly, the authors note that that large carnivores preferentially use roads for movement and the camera photos used were originally collected for a study of leopards. However, there is no mention of the potential intraspecific interactions between the three focal species in this study and leopard (or even interactions among the three species). Was this considered as a covariate in the model and if so, why was it not included? Adding addition information and discussion about the intraspecific responses would be helpful. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Density responses of lesser-studied carnivores to habitat and management strategies in southern Tanzania’s Ruaha-Rungwa landscape PONE-D-20-33931R1 Dear Dr. Hardouin, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Bi-Song Yue, Ph.D Academic Editor PLOS ONE |
| Formally Accepted |
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PONE-D-20-33931R1 Density responses of lesser-studied carnivores to habitat and management strategies in southern Tanzania’s Ruaha-Rungwa landscape Dear Dr. Hardouin: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Bi-Song Yue Academic Editor PLOS ONE |
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