Peer Review History
| Original SubmissionApril 7, 2020 |
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PONE-D-20-09967 Developing and validating a model for measuring adverse events following hip arthroplasty surgery using administrative data without ICD-codes PLOS ONE Dear Dr. Magneli, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Your manuscript has been reviewed by two experts in the field, who request more information and clarification mostly about specifics on modelling. Please submit your revised manuscript by Oct 03 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Susan Hepp Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please provide additional details regarding participant consent. You state that "the patients did not provide an informed consent to the record review, which was accepted by the local ethics committee". Please clarify if the need for consent was waived by the ethics committee. Alternatively, please discuss whether all data were fully anonymized before you accessed them. 3.We suggest you thoroughly copyedit your manuscript for language usage, spelling, and grammar. If you do not know anyone who can help you do this, you may wish to consider employing a professional scientific editing service. Whilst you may use any professional scientific editing service of your choice, PLOS has partnered with both American Journal Experts (AJE) and Editage to provide discounted services to PLOS authors. Both organizations have experience helping authors meet PLOS guidelines and can provide language editing, translation, manuscript formatting, and figure formatting to ensure your manuscript meets our submission guidelines. To take advantage of our partnership with AJE, visit the AJE website (http://learn.aje.com/plos/) for a 15% discount off AJE services. To take advantage of our partnership with Editage, visit the Editage website (www.editage.com) and enter referral code PLOSEDIT for a 15% discount off Editage services. If the PLOS editorial team finds any language issues in text that either AJE or Editage has edited, the service provider will re-edit the text for free. Upon resubmission, please provide the following:
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If your ethics statement is written in any section besides the Methods, please move it to the Methods section and delete it from any other section. Please also ensure that your ethics statement is included in your manuscript, as the ethics section of your online submission will not be published alongside your manuscript. Additional Editor Comments (if provided): 1. Please provide additional details regarding participant consent. You state that "the patients did not provide an informed consent to the record review, which was accepted by the local ethics committee". Please clarify if the need for consent was waived by the ethics committee. Alternatively, please discuss whether all data were fully anonymized before you accessed them. 2. At this time, please thoroughly copyedit your manuscript for language usage, spelling, and grammar. If you do not know anyone who can help you do this, you may wish to consider employing a professional scientific editing service. Whilst you may use any professional scientific editing service of your choice, PLOS has partnered with both American Journal Experts (AJE) and Editage to provide discounted services to PLOS authors. Both organizations have experience helping authors meet PLOS guidelines and can provide language editing, translation, manuscript formatting, and figure formatting to ensure your manuscript meets our submission guidelines. To take advantage of our partnership with AJE, visit the AJE website (http://learn.aje.com/plos/) for a 15% discount off AJE services. To take advantage of our partnership with Editage, visit the Editage website (www.editage.com) and enter referral code PLOSEDIT for a 15% discount off Editage services. If the PLOS editorial team finds any language issues in text that either AJE or Editage has edited, the service provider will re-edit the text for free. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Review of the manuscript for PlosONE by Magneli et al developing and validating a model for measuring adverse events following hip arthroplasty surgery using administrative data without ICD-codes. The research groups hypothesized that they could use administrative data independent of ICD-codes to create a new model with equal or better ability to measure adverse events after hip arthroplasty. They concluded that a prediction model for AEs following hip arthroplasty surgery based on administrative data without ICD-codes is more accurate than a model based on ICD-codes. This is a well written paper with a clear message. The research group did a tremendous job by combining the datasets of the SHAR and the National Patient Register. Additionally using aggregated data from the National Board of Health and Welfare and performing retrospective record review using the Global Trigger Tool. They performed sound statistics with a large variety of testing models which increased strength of this research. However, there are some minor points of attention. What about missing data? Wat are the proportions of missing data for each variable? Does the medical files contain close to all variables for each patient? Is the missing data missing at random? Several different models were tested, with rather similar outcomes on sensitivity and specificity. As you speculate in the discussion this might be caused by the limited number of variables include. Could the model(s) be improved by adding any additional and often available variables? Which variables do you expect to improve the model most? Length of stay at the orthopaedic department is an important variable in your best model, especially in the Swedish situation so you describe in your discussion. Can you elaborate on this ‘length of stay’ variable. Does it possibly contains several unmeasured factors bundles as 'length of stay' at the orthopaedic department? And therefore, how generalizable is your model to other countries? Do you have any suggestions as how to use the results of your study to improve orthopaedic care? Can you elaborate on that? I am pleased with the Figure 1 showing clearly the data and analysis steps. I would suggest to use the same y-axis scale in figure 4 and 5 and clearly state in the title that it concerns Risk of adverse events associated with age/LOS. In my opinion figure 6 is not so informative and these results could be mentioned in the text of the Results section (an/or figure in an appendix). Reviewer #2: I would like to thank the editorial office for giving me the chance to review "Developing and validating a model for measuring adverse events following hip arthroplasty surgery using administrative data without ICD-codes" by Magnéli et al. I interpret this study as an exploratory (diagnostic) study on retrospective data. The overall idea with the study is of utmost importance, and I would recommend acceptance of the manuscript. I do however have comments to the manuscript, which I believe would improve the readability. General comments: It is a very technical paper, and it is hard to follow the red thread from introduction to conclusion. Many models are evaluated on the same data set, and commented on throughout the manuscript, but this study is not on the performance of different AI models, but whether administrative data captures AE better than ICD codes (to my understanding, or do I miss something?). But this also needs to reflect in the title, is it model development or adm. data vs ICD testing or perhaps both you look into. I would suggest revision of the entire manuscript with focus on a single chosen model (the best performing) and simply explain, perhaps in an appendix, that the model was chosen based on sensitivity analysis of many models, and explain the models in the appendix. And then focus the manuscript on this models performance against the gold standard of an ICD code model. Which is what I believe is the authors purpose?? The statistical modeling is complex, and beyond the abilities of this reviewer to evaluate in specifics. A notion of the experience of the author group in DL modeling would thus be nice. And also a passage on how easy the model can be constructed for use in other healthcare systems? It is not clear why the individual administrative data was selected for modelling? Where they simply available or did the authors reflect a priori on this. Needs to be adressed. I would like if the authors state their opinion on what is next - is this model only applicable to Swedish system or should it be validated locally before application. And what is the clinical perspective of the model, is it only for use in administrative settings - such as comparison between centers, or can clinician locally or nationally benefit from this model? A discussion of whether the lower specificity of the new model compared to the ICD model is actually beneficial in the context of use by administrators to oversee surgeons. Do the authors plan to perform a validation of the model in a low prevalent AE group as well? Specific comments: line 36: must be 30 days instead of 90 days? Line 69: I do not like the word "hypothesize" in a retrospective, exploratory study Line 94-106 it is very difficult to comprehend how, and why the groups were constructed, and to what extend this influence the outcome. Why did you want to increase the probability of AE in the sample? Other causes than just for ease of journal review? Also later on discuss how the prevalence of AE in the selected sample influence the accuracy of your models. It is a highly selected dataset which could influence the conclusion. I do not understand Aggregated LOS data? So not individual LOS data?? You discuss later in text but it is not easily understood. line 98 add "on a dedicated sample of patients" after surgery and before the period sign. line 112: "suffering" needs to be defined. In general this is a very loose description of AE, which makes it very difficult for others to replicate your study if desired. Needs to be more clearly stated. line 113-114. - please define "inevitable consequences". See line 112 above. line 115-117 why is the definition of index admission placed under AE definition subheading? line 123 & line 130 I do not understand the difference in the context of this study. Why is this necessary? Line 134 why is LOS trends valuable information in this study? Line 161-162 rephrase to a more scientific description than "we tried to".... Line 204-205 Does this not mean that we should use BOTH administrative data AND ICD codes in future models, instead of only either? Needs to be discussed. Line 220 Only 2/3 were elective, non-fracture patients. Needs to address the consequences - sensitivity analysis. : line 220 "The precision was higher for all patients than for both acute and elective patients." what does this mean for your model and for external validity? Line 226-227: Needs to be discussed in the discussion section as to potential pitfalls of the model. Line 248 "We found that the risk for sustaining an AE increased with longer LOS" - I would not use the word "risk of sustaining". I would use risk for having an registered AE occur increases with longer LOS. Sustaining an AE during admission will lead to longer LOS, LOS does not increase the risk of sustaining an AE during admission in your data set. also since line 253 states: This is logical considering that most AE occurred during the orthopaedic stay. line 268 "the AEs were collected with RRR." Could AEs occur without being registered. I would use term "validated" instead of collected, and add sentence about missing potential AEs. line 262 and line 269 "An interesting finding is that the model with less variables performed better than when all variables were included. ". You place this under strength of your study, but you lack any further discussion into this. This goes as well for the complexity in the model, which gives a worse performance. These two findings has also been found by others in similar AI fields (Lauritsen et al. 2020 Artificial Intelligence in Medicine.). The manuscript would benefit with a discussion of this. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Jeppe Lange [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-20-09967R1 Measuring adverse events following hip arthroplasty surgery using administrative data without relying on ICD-codes PLOS ONE Dear Dr. Magneli, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Nov 30 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Liza N. van Steenbergen Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript is adjusted according to my comments. I consider this manuscript ready for publication. Reviewer #2: I agree with the authors in relation to my Q12. No further change needed in the revised manuscript. In relation to line 121 in revised manuscript. I would ask the authors to add the definition of "suffering" to the text as defined in A to my Q13, and likewise with "inevitable consequences" as defined in A to Q14. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Liza van Steenbergen Reviewer #2: Yes: Jeppe Lange [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Measuring adverse events following hip arthroplasty surgery using administrative data without relying on ICD-codes PONE-D-20-09967R2 Dear Dr. Magneli, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Liza N. Van Steenbergen Guest Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-20-09967R2 Measuring adverse events following hip arthroplasty surgery using administrative data without relying on ICD-codes Dear Dr. Magneli: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Liza N. Van Steenbergen Guest Editor PLOS ONE |
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