Peer Review History
| Original SubmissionDecember 13, 2019 |
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PONE-D-19-34576 MAGE-A3 is a prognostic biomarker for poor clinical outcome in cutaneous squamous cell carcinoma with perineural invasion via modulation of cell proliferation PLOS ONE Dear Dr. Carucci, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We would appreciate receiving your revised manuscript by Apr 11 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Yoshihiko Hirohashi, M. D., Ph. D. Academic Editor PLOS ONE Additional Editor Comments (if provided): Dear Dr. John A. Carucci, As pointed out by reviewer's, please re-consider about specific concerns. Especially, what is the mechanisms that anti-MAGE-A3 antibody have functions on A431 cells. Is MAGE-A3 protein expressed on cell surface? Sincerely yours, Yoshihiko Hirohashi, M. D., Ph. D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. 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This policy and the journal’s other requirements for blot/gel reporting and figure preparation are described in detail at https://journals.plos.org/plosone/s/figures#loc-blot-and-gel-reporting-requirements and https://journals.plos.org/plosone/s/figures#loc-preparing-figures-from-image-files. When you submit your revised manuscript, please ensure that your figures adhere fully to these guidelines and provide the original underlying images for all blot or gel data reported in your submission. See the following link for instructions on providing the original image data: https://journals.plos.org/plosone/s/figures#loc-original-images-for-blots-and-gels. In your cover letter, please note whether your blot/gel image data are in Supporting Information or posted at a public data repository, provide the repository URL if relevant, and provide specific details as to which raw blot/gel images, if any, are not available. Email us at plosone@plos.org if you have any questions. 5. PLOS requires an ORCID iD for the corresponding author in Editorial Manager on papers submitted after December 6th, 2016. Please ensure that you have an ORCID iD and that it is validated in Editorial Manager. To do this, go to ‘Update my Information’ (in the upper left-hand corner of the main menu), and click on the Fetch/Validate link next to the ORCID field. This will take you to the ORCID site and allow you to create a new iD or authenticate a pre-existing iD in Editorial Manager. Please see the following video for instructions on linking an ORCID iD to your Editorial Manager account: https://www.youtube.com/watch?v=_xcclfuvtxQ [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In this paper, the authors examined the expression of MAGE-A3, cyclin proteins, collagens, and MMPs in cutaneous SCC (cSCC) with perineural invasion (PNI). They found that MAGE-A3 and some of cyclins, collagens, and MMPs were upregulated in poorly differentiated cSCC with PNI. Furthermore, they also investigated the role of MAGE-A3 in cancer progression using in vivo and in vitro models. Although this manuscript contains some interesting findings, there are several important issues that need to be improved before publication. Major points: 1) Cutaneous SCC is the common cancer and is not rare. Thus, the authors should be able to collect more samples. The number of patients with cSCC with PNI (only 9 patients) is too small to reach a conclusion. 2) The authors must describe the details of the clinical characteristics of patients with cSCC with PNI. 3) The authors showed that not only MAGE-A3 but also MAGE-A4 mRNA expression was upregulated in poorly differentiated cSCC with PNI in Figure 1A. How about the expression of MAGE-A4 protein in tissue from the patients with cSCC with PNI? The authors should also examine the MAGE-A4 expression in tissue using immunohistochemistry. 4) What is the minimum percentage of MAGE-A3 positive tumor cells required to consider the sample MAGE-A3 positive? 5) Representative immunohistological futures of not only poorly and moderately differentiated cSCC but also healthy controls should be shown in Figure 1B. 6) In Figure 2, the authors treated A431 SCC cells with anti-MAGE-A3 antibody to explore the role of MAGE-A3 in cell cycle progression. What is the mechanism in this experiment? Does MAGE-A3 express on cell surface of A431 SCC cells? Furthermore, the authors compared A431 SCC cells treated with MAGE-A3 antibody with those treated with vehicle or untreated. However, A431 SCC cells treated with isotype control antibody should be used as a control group. If the authors want to examine the role of MAGE-A3 in A431 SCC cells, it may be desirable to knockdown or knockout expression of MAGE-A3 using siRNA or CRISPR/Cas9. 7) In page 15, the authors described that the trend of increased MAGE-A3 expression in Pam 212 SCC tumors was confirmed by immunohistochemical staining. However, there are no immunohistological images. 8) In Figure 4, knockout of MAGE-A3 expression via CRISPR/Cas9 was confirmed by PCR and qPCR. However, the authors should also perform western blot analysis to prove knockout of MAGE-A3 protein. Miner points: 1) Please describe the details of MAGE-A3 antibody such as company, clone name, and dilution rate in EDU assays and Immunohistochemistry of the materials and methods section (page 9 and 10). Reviewer #2: In “MAGE-A3 is a prognostic biomarker for poor clinical outcome in cutaneous squamous cell carcinoma with perineural invasion via modulation of cell proliferation,” Chen et al., demonstrate the prognostic value of MAGE-A3 in clinical outcomes of patients with cutaneous squamous cell carcinoma with perineural invasion. They go on elucidate mechanisms by which MAGE-A3 can positively influence tumor migration and growth. Overall, the study makes the novel association between a cancer-associated gene and squamous cell carcinoma, a skin cancer with significant morbidity and mortality and few specific molecular targets. Further, the authors establish mechanisms by which this gene and protein product impacts cancer cell behavior. SPECIFIC COMMENTS Figure 2, Please report whether MAGE-A3 expressed in A431 cells in vitro by mRNA or protein. Figure 2A, Please include results from IgG1 isotype control treatment if such reagent exists and if such experiments were performed. In the legend, “A341” should be “A431.” Further, please provide any historical data or cited literature indicating that the cellular localization of MAGE-A3 has access to antibody on the surface of cells. Figure 2B, Please include statistical significance data on the graph. Figure 2D, Please describe the use of the anti-p53 Western Blot antibody used in the methods Figure 3A, Please include the number of mice used per cohort & how many experiments were conducted. Further, in the text, the description of the change in growth is reported without units (1112.24?...) – please include units. This is also the case later in the text – please include units numerical values throughout. Figure 3B, Cyclin D2/D3 does not appear to be elevated in PAM212 tumors as text suggests. Quantification not provided. Please clarify this statement. “The trend of increased MAGE-A3 expression in Pam 212 SCC tumors was further confirmed by immunohistochemical staining (Figure 3C)” on page 21 –while Figure 3C reports relative RNA expression. Please clarify this statement. MTS proliferation is noted in the methods but not includes in the Figures. Please remove from the methods if this data is not to be included. Figure 4B, Please include the statistical details in the graph Figure 4C, Please report the number of mice per cohort & how many experiments were performed; Please include the statistical significance in the graph. Figure 4D & 4E are appear to be transposed compared to what is described in the text on page 16. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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MAGE-A3 is a prognostic biomarker for poor clinical outcome in cutaneous squamous cell carcinoma with perineural invasion via modulation of cell proliferation PONE-D-19-34576R1 Dear Dr. John A. Carucci, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Yoshihiko Hirohashi, M. D., Ph. D. Academic Editor PLOS ONE Additional Editor Comments (optional): The authors addressed concerning points. Reviewers' comments: |
| Formally Accepted |
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PONE-D-19-34576R1 MAGE-A3 is a prognostic biomarker for poor clinical outcome in cutaneous squamous cell carcinoma with perineural invasion via modulation of cell proliferation Dear Dr. Carucci: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Yoshihiko Hirohashi Academic Editor PLOS ONE |
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