Peer Review History
| Original SubmissionFebruary 7, 2020 |
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PONE-D-20-03592 Choosing between AR(1) and VAR(1) Models in Typical Psychological Applications PLOS ONE Dear Mr Haslbeck, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please, take into account all the considerations raised by the reviewers. We would appreciate receiving your revised manuscript by May 22 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Miguel Angel Sánchez Granero Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. PLOS requires an ORCID iD for the corresponding author in Editorial Manager on papers submitted after December 6th, 2016. Please ensure that you have an ORCID iD and that it is validated in Editorial Manager. To do this, go to ‘Update my Information’ (in the upper left-hand corner of the main menu), and click on the Fetch/Validate link next to the ORCID field. This will take you to the ORCID site and allow you to create a new iD or authenticate a pre-existing iD in Editorial Manager. Please see the following video for instructions on linking an ORCID iD to your Editorial Manager account: https://www.youtube.com/watch?v=_xcclfuvtxQ [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors conducted comprehensive simulations to examine the performance of AR vs. VAR model using typical psychological time series data, and compared their performance in estimation error and prediction error as related to the length of time series and the characteristics of the true model. The study extended from Bulteel et al. (2018) and its results make a major contribution to the literature. In general, the manuscript is well written and clearly organized. I have a few comments and suggestions for the authors to consider when revising their manuscript. My first general concern is on the “typical” part of the study. The authors, and the Bulteel et al. (2018) as well, fail to elaborate the main reason for the application of VAR model. More than often for applied researchers, they choose to use the VAR model because they are interested to know whether one variable A is related to another variable B at a later time (i.e., cross-lagged paths), after controlling for B at previous time. In other words, one is interested to know whether A has added value in terms of the prediction of B, and the choice of A and B are theoretically derived. From this point of view, it is theoretically meaningful to adopt VAR model rather than AR model. In such situation, the research question becomes whether VAR can accurately recover the cross-lagged links between variables, rather than whether AR outperforms VAR, under some conditions. Relatedly, the authors initially claimed that the length of most applied psychological time series data fall between 30 to 200. It is important to note that the MindMaastricht dataset, where the current simulations are based on, in my mind are not typically psychological time series data (52 individuals with an average of 41 measurements on 6 variables). All three data used by Bulteel et al. (2018) face the same issue as well (individuals fewer than 100, lengths between 41 and 70). From my reading of the applied literature, most studies tend to have a lot more participants with shorter time series and fewer variables (at least those examined in the VAR model). Whether the mean number of 92 based on estimation error, or the number of 60 for prediction performance, they are all beyond the length of most typical psychological time series data. Does it mean that applied researchers should just always go with the AR model? The authors should discuss this point. The authors encouraged future studies with more than 6 variables. However, with fewer than 6 variables considered, how would the current findings hold (I reckon n for both estimation and prediction errors likely will go down)? It is likely that it may take fewer n for VAR to outperform AR. For each VAR model (R and D) condition, 100 independent time series were simulated. These are more referred to as “replications” for each model design condition, rather than “iterations” (e.g., page 5 line 148). The authors should revise the term where applicable throughout the manuscript. The authors simulated n = 500 for estimation simulation but n = 2000 for prediction simulation. From the results and discussions, it appears that 2000 does not matter too much. Discussions are needed regarding this point. Figure 4b and on page 11 line 350, the authors should state how many cases have EEcomp unequal to zero. The authors mentioned mixed models – some recent simulation work on DSEM should be cited, which have shown satisfying estimation results for VAR. Furthermore, the authors should briefly discuss the subgroup/mixture approach when there are distinct subgroups of time series patterns (e.g., GIMME). Minor comments When referring to the mixed effects examined in Bulteel et al. (2018), at least for the first time (page 2 line 40), it would be helpful to clarify it refers to multilevel model with random effects. On page 4 line 123, it should be Figure 6 in the supplementary materials. On page 7 line 201, two “have”s; line 202, two “the”s. Reviewer #2: The authors present results from a series of simulation studies examining the performance of AR and VAR models. Results assist the reader in determining which model structure (i.e., AR versus VAR) to use when modeling n=1 time series data. I appreciate and admire the clarity with which the authors describe complex methodology and present their results. I believe that this paper will be a valuable contribution to the field of psychological time series. Below I have outlined suggestions to facilitate the connection of the theoretical nature of this manuscript to applied psychological data. 1) Page 3 and 4: I appreciate the novel methods the authors used to generate their simulated data through the use of parameters, R & D. However, I am concerned that this method introduces artifacts into the sampling scheme, due to the fact that there is a correlation between R & D (as shown in Figure 6). Thus, it seems that there would be bias in the models generated with this technique. In general, although the authors provide some justification for using R & D, it would be helpful for the author to provide further explanation of their parameterization methods in light of this correlation. In particular, it seems that this correlation may be artificially induced by the authors’ definition of R & D. For example, a theorem from linear algebra states that the sum of the eigenvalues of a matrix (i.e., D) is equal to the sum of its diagonal elements (i.e., it’s trace, in this case the AR parameters included in the numerator of R). Hence, the numerator of R is essentially D. This suggests that the R-D parameterization is likely responsible for the correlation in the simulation samples. I recommend that the authors acknowledge this in their description of their parameterization methods. Additionally, I recommend that they examine the correlation between R & D to demonstrate that this correlation is sufficiently low so as to not overly bias the simulation data. Finally, I strongly suggest that authors reformulate R so that it is free from the influences of this correlation, such as by using the current denominator of R. This would allow for the modeling of autoregressive effects (i.e., D) and cross-lagged effects (i.e., denominator of R), independently. 2) I think it may be useful for the authors to provide more recommendations for the design of psychological time series studies based on their data. In other words, are there suggestions for how applied researchers should implement these findings? 3a) For example, do these results support the recommendation of collecting more observations in general? 3b) Lines 443-455 refer to several theoretical points about choosing between VAR and AR models under the condition of equal estimation error. Given that applied researchers may want to select one model over the other for hypothesis-testing reasons (e.g., testing the AR effect of mood versus including the cross-lagged effect of anxiety on mood), could you provide clarification on whether an applied researcher would be able to test for estimation error equivalence using empirical data? If that is not possible, I believe it may be helpful to state this explicitly. 3c) Line 385: In regards to comparing the 1SER rule versus selecting the model with the lower prediction error, what should applied researchers take away from these results if they are working with data with n > 60? 4) Line 173: Could you clarify what is meant by specifying the data generating model and how a researcher would do this using empirical data? 5) Line 509: I recommend rephrasing this sentence to specify that the relative performance of AR and VAR models were studied using simulations of data generated from typical psychological applications. 6) Line 24 = missing the word, “the”? Overall, I appreciate the authors’ contribution the field of time series psychometrics. I hope that the authors find my comments helpful in assisting them with revising the draft for publication. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Yao Zheng Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-20-03592R1 Choosing between AR(1) and VAR(1) Models in Typical Psychological Applications PLOS ONE Dear Dr. Haslbeck, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please, attend the minor suggestion from both reviews. Please submit your revised manuscript by Nov 05 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Miguel Angel Sánchez Granero Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors are very responsive to my previous comments and have addressed them well. I thank the authors for another contribution to the literature. One tiny new comment: The authors said on page 8 that "for each of the 6000 VAR models described in the previous section" below "Assessing ngap through simulation." I may have missed it but I only recall the 7400 models the authors mentioned previously. Reviewer #2: The authors present results from a series of simulation studies examining the performance of AR and VAR models. Results assist the reader in determining which model structure (i.e., AR versus VAR) to use when modeling n=1 time series data. I appreciate the efforts the authors have undertaken to revise the manuscript. My very minor suggestion is to change “researcher” to “researchers” in line 416. No further recommendations. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Choosing between AR(1) and VAR(1) Models in Typical Psychological Applications PONE-D-20-03592R2 Dear Dr. Haslbeck, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Miguel Angel Sánchez Granero Academic Editor PLOS ONE Additional Editor Comments (optional): Please, follow Reviewer 2 suggestion: My very minor suggestion is to change “researcher” to “researchers” in line 416 (now line 425). |
| Formally Accepted |
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PONE-D-20-03592R2 Choosing between AR(1) and VAR(1) Models in Typical Psychological Applications Dear Dr. Haslbeck: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Miguel Angel Sánchez Granero Academic Editor PLOS ONE |
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