Peer Review History
| Original SubmissionApril 24, 2020 |
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PONE-D-20-11864 Association between periodontal disease due to Campylobacter rectus and cerebral microbleeds in acute stroke patients PLOS ONE Dear Dr. Hosomi, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The manuscript would be enhanced with the inclusion of a range of T2*-weighted MRI for white matter lesion and cerebral microbleeds. The authors should address the correlation between the severity of lesions in MRI and periodontal pathogens. Please submit your revised manuscript by Sep 04 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Hansel McClear Fletcher, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. Thank you for including your competing interests statement; "Dr. Maruyama reports grants and personal fees from Eisai, grants and personal fees from Pfiser, grants and personal fees from Takeda Pharmaceutical, grants and personal fees from Otsuka Pharmaceutical, grants and personal fees from Nihon Pharmaceutical, grants and personal fees from Teijin Pharma, grants from Shionogi, grants and personal fees from Fuji Film, grants and personal fees from Boehringer Ingelheim, grants and personal fees from Sumitomo Dainippon Pharma, grants and personal fees from Nihon Medi-Physics, grants and personal fees from Bayer, grants and personal fees from MSD, grants and personal fees from Daiichi Sankyo, grants and personal fees from Kyowa Kirin, grants and personal fees from Sanofi, grants and personal fees from Novartis, grants and personal fees from Kowa Pharmaceutical , grants and personal fees from Astellas Pharma, grants and personal fees from Japan Blood Products Organization, grants and personal fees from Mitsubishi Tanabe Pharma, personal fees from Ono pharmaceutical, personal fees from Biogen, personal fees from Bristol-Myers Squibb, grants from Mylan, outside the submitted work. All other authors declare that they have no conflicts of interest." Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared. Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf. Please know it is PLOS ONE policy for corresponding authors to declare, on behalf of all authors, all potential competing interests for the purposes of transparency. PLOS defines a competing interest as anything that interferes with, or could reasonably be perceived as interfering with, the full and objective presentation, peer review, editorial decision-making, or publication of research or non-research articles submitted to one of the journals. Competing interests can be financial or non-financial, professional, or personal. Competing interests can arise in relationship to an organization or another person. Please follow this link to our website for more details on competing interests: http://journals.plos.org/plosone/s/competing-interests 3. We note that you have included the phrase “data not shown” in your manuscript. Unfortunately, this does not meet our data sharing requirements. PLOS does not permit references to inaccessible data. We require that authors provide all relevant data within the paper, Supporting Information files, or in an acceptable, public repository. Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The submission by Shiga et al. describes immunodetection of C. rectus at elevated levels in patients with cerebral microbleeds in acute stroke patients. The strengths of the manuscript are in the organization and presentation of data in the manuscript, a study that directly examines associations using human clinical data, and identification of C. rectus as on oral organism associated with microbleed in acute stroke patients. Areas of weakness include the lack of oral examination at the time of patient evaluation/serum collection, the lack of oral subgingival biofilm samples to identify the presence/absence of C. rectus in these oral samples, and reliance on antibody levels (ELISA) data only to indicate an association. Despite the clear omissions noted, this reviewer is weakly enthusiastic about the manuscript. Specific comments are as follows: 1- As identified by the authors, the strongest associated factor in acute stroke patients was hypertension and this aligns with the disease as an anticipated result. C. rectus is a significant factor in this study, but other periodontal organisms such as P. gingivalis, and A. actinomycetemcomitans have been associated with stroke previously in a study that had substantially more patients than the current study. What would be the precise limitation of enrolling fewer patients and observing differences in reported outcomes between the present study and the Pussinen et al. study that is referenced? 2- In the Methods, the number of patients should be identified, also, there is no mention of the numbers of total patients approached for exclusion in this study, or if there are any exclusion criteria. 3- There is essentially no description of the ELISA assay, determination of what type of antibodies (all, IgM, IgG, etc.) are being screed for in the sera. Further, it is not clear why pooled serum from only 5 health individuals was used to control? A similar number of control subject sera should be included in the study data, and there should be no pooling of samples as it is known that many periodontally healthy individual can have relatively different levels of circulation serum antibodies to periodontal disease-associated bacteria. This leads to potential concerns about statistical analysis of these serum antibody data. There is no description of the specific strains of each bacteria used in the present study. This must be included as it is known that organisms such as P. gingivalis have a fairly high degree of heterogeneity. 4- Page 14 (lines 209-211). These data are different than what is presented on page 10. Please clarify. 5- Page 20 (lines 291-294). With the knowledge of S. mutans associations association with CMBs, it is curious that in the present manuscript that S. mutans levels of specific antibody were not assessed in the patients examined? Why only the focus on the subgingival group? Indeed, this reviewer thinks that having these data would make for an interesting and important comparison to prior work in this area. 6- CRP was the only inflammatory marker examined. Numerous studies support that pro-inflammatory cytokines serve as important markers of overall systemic inflammation. Further, systemic inflammation is liked to IL-1 (Sobowale et al. Stroke 2016. 47:2160-67). Evaluation of the levels of other inflammatory markers would improve understanding of potential underlying mechanisms in this association, and are thus suggested. Reviewer #2: The authors aim to evaluate the associations between periodontal pathogens with the presence or severity of cerebral microbleeds and white matter lesions in acute stroke patients. There are good numbers of observational studies that periodontal disease is highly associated with the incidence of cardioembolic and thrombotic stroke. Understanding the whether any specific types of pathogen related to periodontitis is associated with the incidence of stroke is highly crucial. The experimental design is well organized, and the results might be impactful to the field of stroke and cerebrovascular disorders. I have only one minor suggestion. It is a well written and taught study, which would be impactful in the field. However, the quality/number of the figures are quite low, I will suggest improving numbers of figures including a range of descriptive T2*-weighted MRI for white matter lesion and cerebral microbleeds. It would necessary if authors have correlative illustrations between severity of lesions in MRI and of periodontal pathogens. This figure would be increase quality of presentation. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-20-11864R1 Association between periodontal disease due to Campylobacter rectus and cerebral microbleeds in acute stroke patients PLOS ONE Dear Dr. Hosomi, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please clearly list the limitations of the study and clarify author contributions. Please submit your revised manuscript by Oct 17 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Hansel McClear Fletcher, Ph.D. Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The revised submission PONE-D-20-11864R1 has made significant improvements from the interesting original submission. As few items are felt to require additional attention. 1- In the limitations of the study, the lack of a clinical periodontal exam of all patients included in this study should be listed as limitation #1 in the listing of limitations. 2- In the limitations of the study, the lack of a similar number of controls, and the handling of the 5 samples (as pooled) should be moved to limitation #2 in the listing of limitations described in the discussion. 3- This reviewer thanks the authors for identifying that IgG levels were determined. However, the indication of “titer” is not presented in any of the tables, rather “% positive” was used to compare between clinical groups. This reviewer suggests that the serum titer +/- error for each bacterium for each of the patient/serum samples examined be included in each of the tables reporting titer information. Minor points: 1- Please define “WMLs” on first use in the text. 2- This reviewer thanks the authors for including the strain examination data for the various bacterial lysates in the response to reviewer comments. Please apply the strain information throughout the Methods, and presented data (all relevant Tables). 3- Table 2 and Table 3 titles. Please change “antibody” to “IgG”. 4- In all tables, please identify using symbols, those data that demonstrate significant differences between groups. Please identify and describe the symbol and test used in each of the corresponding figure legends, table descriptions, respectively. Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Onder Albayram [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Association between periodontal disease due to Campylobacter rectus and cerebral microbleeds in acute stroke patients PONE-D-20-11864R2 Dear Dr. Hosomi, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Hansel McClear Fletcher, Ph.D. Academic Editor PLOS ONE |
| Formally Accepted |
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PONE-D-20-11864R2 Association between periodontal disease due to Campylobacter rectus and cerebral microbleeds in acute stroke patients Dear Dr. Hosomi: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Hansel McClear Fletcher Academic Editor PLOS ONE |
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