Peer Review History
| Original SubmissionJuly 30, 2020 |
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PONE-D-20-23728 SECOND WEEK METHYL-PREDNISOLONE PULSES IMPROVE PROGNOSIS IN PATIENTS WITH SEVERE CORONAVIRUS DISEASE 2019 PNEUMONIA: AN OBSERVATIONAL COMPARATIVE STUDY USING ROUTINE CARE DATA. PLOS ONE Dear Dr. Ruiz-Irastorza, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by 30.09.2020. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please include the date(s) on which you accessed the databases or records to obtain the data used in your study. 3. Thank you for stating in the text of your manuscript "The protocol was approved by the Basque Country Research Ethics Committee (code EPA2020032) in accordance with the Declaration of Helsinki’s guidelines for research in humans. This study has been registered in the EU PAS Register with the number EUPAS36287.". Please also add this information to your ethics statement in the online submission form. 4. In your ethics statement in the Methods section and in the online submission form, please provide additional information about the data used in your retrospective study. Specifically, please ensure that you have discussed whether all data were fully anonymized before you accessed them and/or whether the IRB or ethics committee waived the requirement for informed consent. If patients or next of kin provided informed written consent to have data from their medical records used in research, please include this information. 5. One of the noted authors is a group or consortium [Cruces COVID Study Group]. In addition to naming the author group, please list the individual authors and affiliations within this group in the acknowledgments section of your manuscript. Please also indicate clearly a lead author for this group along with a contact email address. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This study further supports the findings of recently published work evaluating the impact of steroids in patients hospitalised with COVID19 pneumonia. The concordance of the results presented here reinforce the evidence base, which although reassuring, does not really add anything to what has already been established in the RECOVERY trial. Indeed, the additional benefit of a small retrospective observational study compared to a large, prospective clinical trial that has clearly established the efficacy of steroids in patients with severe disease is questionable. Issues: Observational, retrospective nature of study and relatively small numbers (242 vs 6425 in RECOVERY). MP was given at the discretion of the attending physician and this is likely to have introduced bias. The characteristics of patients who received MP compared to those who did not differed making it hard to draw conclusions from the outcomes – for example, only 14.8% who had MP had diabetes compared to 23.2% of those who did not. Patients receiving MP had higher inflammatory markers (ferritin, CRP), and more were on LMWH, which may be of significance given the high incidence of pulmonary emboli in patients with acute infection. Table 2 compares the demographics of patients who received week 2 MP with those who did not but the latter group also includes those who had MP at some other point (33 patients). It would be useful to separate out these groups and to provide further information on the 14% of patients who had MP outside of week 2. The secondary outcome was nosocomial infections but it is unclear how these were defined (and may have be difficult to differentiate from worsening primary disease). Details of the steroid regime and characteristics of patients receiving non-pulsed GC were also not clearly stated and there appears to be a wide dose range (could some patients be on pre-existing steroids?). The authors mention that pulsed MP was not associated with increased infection rate whereas non-pulsed GCs were. The numbers of patients in the GC subgroup was small and so I do not think conclusions can be drawn from the results. Furthermore, given that the duration of steroids was relatively short in both groups (only a mean of 6.5 days in the non-pulsed GC group), it would seem unlikely that infection risk would be significantly higher in the group receiving lower dose for marginally longer. I suspect that confounding factors are responsible but no information has been given on the non-pulsed GC subgroup. Whilst the authors confidently report that non-pulsed GC is associated with higher infection risk, they do not provide a possible explanation for their observation and place too much weight on this finding. A lot of emphasis was put on timing of MP and the importance of short duration but little information was given regarding when patients had it outside this window i.e. how many had it at week 1 and how many at week 3. As the majority of patients who present to hospital have had symptoms for a number of days (often a week or so), then most would not have received it within the first week. Patients receiving MP in the third week, at the judgement of the attending physician, are likely to have a severe protracted form of the disease and therefore difficult to determine whether the steroids really were harmful (again, a separate demographic table looking at this group of patients would be helpful). The majority of patients in the RECOVERY trial received dexamethasone in the second week so this is not a new finding. The first paragraph of the introduction states that no drug has been found to improve the outcome of severe COVID-19 infection. Clearly, this is no longer true with the publication of the RECOVERY trial (and other smaller studies), which are then referred to in the discussion. The rationale for high-dose steroids for a short period of time is logical in the context of severe COVID19 infection where an exuberant immune response is thought to drive the later phase pathophysiology, although the authors mention that this is the case in many autoimmune diseases. This is not true however, and in many diseases (i.e. inflammatory interstitial lung disease (including organising pneumonia), vasculitis, rheumatoid arthritis etc) require long term immunosuppression which often takes the form of a high dose steroid regime that is weaned over time. In summary, the data presented in this study is not new and the findings have recently published elsewhere. The secondary conclusions regarding infection risk and timing of MP are not adequately supported by the data presented. Reviewer #2: PONE-D-20-23728 The authors conducted an observational study in which patients with COVID-19 pneumonia who received methyl-prednisolone pulse therapy during the second week of disease (week-2-MP) are compared with those who did not receive, in terms of time to death, and time to death or endotracheal intubation. They concluded that week-2-MP are effective in improving the prognosis of patients with severe COVID-19 pneumonia. The authors do not set a significance level based on the p-value of the statistical analysis. Results are arbitrarily described to support the author's hypothesis. This study suggests that methyl-prednisolone pulse therapy may improve the prognosis of CODIV-19 patients depending on the timing of administration and the patient's condition. On the other hand, this study shows that non-pulse glucocorticoid treatment, and methyl-prednisolone pulse therapy other than the second week were harmful. In both respects, this study may be helpful for broad readers to treat COVID-19 patients, while several undescribed matters of the study should be clarified. # The reviewer is not provided with supplemental table 1, 2 and 3, if any. Questions; 1. The definition of pneumonia in this study is not described. How did the authors diagnose pneumonia, by chest CT scan, chest radiograph, or clinical impression? 2. The definition of onset of symptoms is not described. What are the symptoms that represent the onset of COVID-19 in this study? 3. Does “SaO2” in this manuscript represent arterial oxygen saturation? Is this SpO2 (percutaneous arterial oxygen saturation), isn’t it? 4. How was the FiO2 for each patient who did not receive endotracheal intubation determined? Was it really measured, or was it only speculated? 5. “inflammatory state at admission was defined as the presence of any of the following: lymphocyte count <800/mm3, platelet count <150,000/mm3, ferritin >1000 mg/dl, C-reactive protein >100 mg/dl, D-dimers >1000 ng/ml. “ The values of ferritin and C-reactive protein in this definition seem to be very high. What are the normal ranges of these five measurements at the hospital where this study was done? 6. page 9; “The Kaplan-Meier failure curves (figure 1a) showed a decreased risk of death of patients in the week-2-MP group with a trend for significance (log-rank test, p=0.102).” How do the authors select significant results from this study based on the statistical p-value? What does “a trend for significance” mean? 7. Figure 1b has no title, like "2b: Patients with low SaO2/FiO2 (n= 122). Log-rank test, p=0.032.”. 8. page 10 “In the model with mortality as outcome, week-2-MP patients showed a trend for lower mortality (HR 0.48, 95%CI 0.14 to 1.57, p=0.225), whilst out-of-week-2- MP patients had an increased risk of death (HR 2.49, 95%CI 0.87 to 7.11, p= 0.088), both compared with no MP patients.“ Comparison among 2-week-MP, out-of-week-2-MP and no MP patients is critical for this study. These data (probably in supplemental table 1, 2 and 3) should be presented as main tables. 9. Whole cohort (n=242) may contain the following four patient groups. 1, Week-2-MP patients (n=61). 2, Out-of-week-2-MP patients (week 1 or 3, n=33?). 3, Patients who did not receive any MP, but received any glucocorticoid (n=35?). 4, Patients who did not receive any glucocorticoid (n=113?). The authors do not present the outcomes of these four patient categories clearly. Tables 2 and 3 should include HRs for these four patient groups. What is the outcome of patients who did not receive any glucocorticoid in Table 2 and 3 analysis? 10. Since out-of-week-2-MP patients had an increased risk of death, awareness of the onset of disease is critical. Actually, most people with SARS-CoV-2 infection have no recognized symptoms. Nevertheless, some of those people have asymptomatic pneumonia diagnosed by lung CT scan (CT features of SARS-CoV-2 pneumonia according to clinical presentation: a retrospective analysis of 120 consecutive patients from Wuhan city. Eur. Radiol. 30 (8), 4417–4426), and have even asymptomatic hypoxemia. It may be difficult to determine the actual onset of COVID-19 pneumonia. Therefore, clinically, it may be difficult to decide when the second week of disease begins and when week-2-MP therapy should be given. How do the authors think about it? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Tomohiko Aoe [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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SECOND WEEK METHYL-PREDNISOLONE PULSES IMPROVE PROGNOSIS IN PATIENTS WITH SEVERE CORONAVIRUS DISEASE 2019 PNEUMONIA: AN OBSERVATIONAL COMPARATIVE STUDY USING ROUTINE CARE DATA. PONE-D-20-23728R1 Dear Dr. Ruiz-Irastorza, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Aleksandar R. Zivkovic Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-20-23728R1 Second week methyl-prednisolone pulses improve prognosis in patients with severe coronavirus disease 2019 pneumonia: an observational comparative study using routine care data. Dear Dr. Ruiz-Irastorza: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Aleksandar R. Zivkovic Academic Editor PLOS ONE |
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