Peer Review History
| Original SubmissionDecember 3, 2019 |
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PONE-D-19-33515 Dolutegravir: virologic response and tolerability of initial antiretroviral regimens for adults living with HIV PLOS ONE Dear Dr Montarroyos, Thank you for submitting your manuscript to PLoS ONE. We have received comments from three experts in the field. Unfortunately, two of them (reviewers no. 1 and 3) consider that your paper should be rejected or needs major revision. Although detailed critiques are given below, according to reviewers, major limitations of your study are: 1) Conclusions of your paper are not clear. Your manuscript should specify in a clear manner its major contributions to our current knowledge on dolutegravir therapy. 2) Relevant references are lacking and proper discussion of your findings in relation to other studies is missing, It is particularly important to cite published papers on dolutegravir therapy (particularly those coming from Brazil) and clarify how conclusions of those reports differ from yours. 3) The methods section should be expanded to clarify the number and type of samples (patients) analyzed and details on how the analysis was performed, 4) The manuscript needs extensive editing. English usage and grammar should be largely improved. In summary, we think that your manuscript needs MAJOR REVISION and you need to convince the two more critical reviewers in order to get your manuscript accepted for publication. If you are prepared to undertake the work required, I would be pleased to reconsider my decision. We would appreciate receiving your revised manuscript by Feb 27 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Luis Menéndez-Arias, Ph. D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. Please describe all virological measurements in the methods section. 3. In your Data Availability statement, you have not specified 'The data underlying the results presented in the study are available fromulisses.montarroyos@upe.br', but this can not be found. PLOS defines a study's minimal data set as the underlying data used to reach the conclusions drawn in the manuscript and any additional data required to replicate the reported study findings in their entirety. All PLOS journals require that the minimal data set be made fully available. For more information about our data policy, please see http://journals.plos.org/plosone/s/data-availability. Upon re-submitting your revised manuscript, please upload your study’s minimal underlying data set as either Supporting Information files or to a stable, public repository and include the relevant URLs, DOIs, or accession numbers within your revised cover letter. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. Any potentially identifying patient information must be fully anonymized. Important: If there are ethical or legal restrictions to sharing your data publicly, please explain these restrictions in detail. Please see our guidelines for more information on what we consider unacceptable restrictions to publicly sharing data: http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Note that it is not acceptable for the authors to be the sole named individuals responsible for ensuring data access. We will update your Data Availability statement to reflect the information you provide in your cover letter. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes Reviewer #3: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes Reviewer #3: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Correa et al describe their experiences with DTG containing regimens in a patient cohort from Brazil. As highlighted by the authors, the data on efficacy and safety of DTG, also in real life settings, has been extensively studied. This limits the novelty of this manuscript apart from that it is from Brazil, a country where like in the main studies on DTG subtype B is dominant and where DTG has been introduced in Jan 2017. My main comment therefore is that the authors fail to make clear to me what their study and research adds to the already existing clinical information on DTG, both regarding wk24 data and tolerability. Without that, it would add little to the scientific community as low-level evidence retrospective analysis of a single center experience unfortunately. Other major comments: The authors state that no real life data has been published. However, publications on this do exist. For example, there is a recent publication from Brasil which highlights the high potency of DTG in an analysis of 112243 patients who were prescribed DTG or one of to other regimens (Pascom AR JIAS 2019). Also, another study from Brazil on 107647 patients (including 10.5% on DTG) showed a very favorable suppression rate on DTG which was also comparable to the suppression rate in this study (89.1% vs 90.5%). It is unclear to me how the authors can substantiate their statement or how their study differs from these studies. Although it seems to be a retrospective analysis, the authors should state whether it was prospective or retrospective in their methods section. The in- and exclusion criteria, data collection and the primary outcomes are not (well) defined. The main reason to do the study was to 'aimed to estimate the frequency of individuals with a virologic response by week 24 of antiretroviral treatment and to describe the adverse events of the regimen containing dolutegravir'. In that perspective it is a main limitation that only from a approx 2/3 of total patients had lab data available. From the text it is unclear why the 93 patients were excluded (it reads '93 individuals provided had laboratory data'?) Open door, but 24 weeks of follow up is too short to make any meaningful conclusions in my perspective for a real life data study and this should be acknowledged in a better way than it is currently presented. Longer follow up is required. To present the limitations of the present study as 'some methodological limitations' is an understatement in my perspective and the authors should evaluate that more thoroughly. Minor comments: What do the authors mean by 'bidirectional cohort study'? Reviewer #2: The manuscript by Correa A et al. is well written and structured. The work describes a real-life experience in the use of dolutegravir in a cohort of HIV infected patients. There are several data in literature describing the use of dolutegravir in clinical practice: I think that the Authors should improve thir discussion comparing the data presented with these other studies. Moreover, it should be clarified if the adverse events during the treatment with dolutegravir led to the discontinuation of the regimen. Reviewer #3: The present manuscript evaluated the efficacy and safety of a first line antiretroviral therapy based on dolutegravir. The authors concluded that dolutegravir based combination in first line therapy is a well tolerated and effective drug in the first 24 week follow-up. However, several aspects should be examined before consider it for publication. In more detail: Major comments: 1. Patient population: A number of different patients have been used to assess toxicity and efficacy. This difference makes it difficult to interpret the results. - In the results section the authors stated that “Of the 562 individuals taking dolutegravir registered on SICLOM, we identified 230 who initiated the first antiretroviral regimen containing dolutegravir” However, only 222 were included in the tolerability analysis and 137 for the virological response. I suggest unifying the population for a better understanding of the results. - Are there any baseline difference between the population included for tolerability and virological response? - How many patients included in the virological study had toxicity events? - What are the efficacy and safety data for the same population studied (f.e: 137)? 2. Immunologic recover: - Although the baseline value of CD4 of the study population is high, 392, it is noteworthy that the average recovery of CD4 at 24-36 weeks of follow-up is only 50 cells. Given that the virological efficacy is high, what is the explanation for this relatively low immune response? - The information recorded in figure 2 does not reflect the poor CD4 recovery mentioned along the test. - Figure 2 represents mean CD4 counts: o In what population? o There is a significant increase of CD4 counts from 390 up to 715 at 12 months. However, after that there is a decrease from 715 to 550. What is the explanation for that? Please clarify the information recorded in figure 2. 3. Virologic failure: - For the virological analysis only 137 patients has been considered. Among this group the efficacy seems to be similar to that presented in other studies. However, have you been observed any difference when stratified patients according their baseline viral load (<100,000 vs >100,000 copies/mL)? - There is no resistance analysis for the 15 patient with virological failure. Could you provide any data of resistance? Minor comments: - Page 5 line 90: “93 individuals provided had laboratory data….” You men 93 individual provided had not….? - Page 6 line 100: “the median time using ART was 13.2 months.” If the median time on dolutegravir was 13 months why was the virologic analysis only performed at week 24? - Table 1. Please specify if data recorded in this table correspond to 230, 222 or 137 patients. - Table 2. Percentages of adverse events are referred to the 23 individuals who presented any event. This is confusing since it gives the impression that the adverse events rates were very high. - Page 10 line 173. “….. of ART of 334,000 copies was reduced to a median of 193….” This information s not recorded in the result section. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Dolutegravir: virologic response and tolerability of initial antiretroviral regimens for adults living with HIV PONE-D-19-33515R1 Dear Dr. Montarroyos, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Luis Menéndez-Arias, Ph. D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: I have no further comments for the authors on this submitted manuscript. My questions have been addressed. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Dr. Casper Rokx |
| Formally Accepted |
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PONE-D-19-33515R1 Dolutegravir: virologic response and tolerability of initial antiretroviral regimens for adults living with HIV Dear Dr. Montarroyos: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Luis Menéndez-Arias Academic Editor PLOS ONE |
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