Peer Review History
| Original SubmissionMarch 2, 2020 |
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PONE-D-20-05632 Prognostic effect of pretreatment albumin-to-alkaline phosphatase ratio in human cancers: a meta-analysis PLOS ONE Dear Dr. Gu, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jul 09 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Jason Chia-Hsun Hsieh, M.D. Ph.D Academic Editor PLOS ONE Additional Editor Comments: The manuscript contains several problems, which bring the difficult decision for the manuscript. 1. The terminology and ways of interpretation seemed to be strange in the related professional fields. For example, the use of the random-effect model, an ideal OS, negative metastasis, lymph node metastasis, etc. require recheck. 2. There is no clinical use when there are no prospective trials conducted. Some interpretation for clinical use is too elaborate. For example, AAPR can help provide accurate and personalized therapy. 3. The unclear cutoff value of AAPR, some wrong HRs, and typos in the article limits the scientific values. Please respond to the reviewers' comments in detail carefully. Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please provide the complete search strategy for at least one database as a new supporting information file. 3. Please amend your list of authors on the manuscript to ensure that each author is linked to an affiliation. Authors’ affiliations should reflect the institution where the work was done (if authors moved subsequently, you can also list the new affiliation stating “current affiliation:….” as necessary). 4. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly Reviewer #3: Yes Reviewer #4: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No Reviewer #3: Yes Reviewer #4: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In their manuscript, Guo and colleagues demonstrated that he albumin and alkaline 19 phosphatase ratio (AAPR) could be taken as a promising marker of prognosis. They analyzed the 5,204 cases of 8 types by using meta-analysis, and found that AAPR could result in better 27 DFS (HR=0.554, 95% CI: 0.465–0.659, p<0.001). Furthermore, the manuscript is well written and succinct. Reviewer #2: The methodology of the meta-analysis is appropriate. However, there are several interpretations of the findings that could be problematic. 1. The authors stated several times that "high AAPR would ..." What is the threshold for "high" AAPR? Given that the cutoff values in the included literature varied, and the relative outcome measures (hazard ratio and odds ratio) were used, it may be better to say "higher AAPR would ..." 2. Line 97. "In order to determine the heterogeneity in these studies, a random-effect model was adopted." Random-effect model is used when there is heterogeneity. Random-effect model is not used to determine the heterogeneity; heterogeneity is determined, for example, by I^2 and Q statistics as the authors stated. 3. Line 138. "...higher AAPR would lead to an ideal OS ..." What did "an ideal OS" refer to? 4. Association with other outcomes / clinical factors. 4a) Line 165 and 170. What is "negative metastasis"? The authors stated that "high AAPR would result in ... without / no distant metastasis" (e.g. in Abstract and the Results section of the main text). This is too strong to say that high (enough) AAPR would lead to no distant metastasis. 4b) Line 160. Correlating AAPR and gender / infiltration. Usually we correlate the measure (AAPR) with outcome (e.g., survival, presence of diseases) but not demographics. Instead, the independence between AAPR and gender could be assessed by the heterogeneity between subgroups. Similarly, "Infiltration (Tis-1–2 vs. T3-4)" is more the pretreatment prognosis rather than a post-treatment outcome? Also, "A total of nine studies with 3,276 patients reported that there was an association between AAPR and gender (Table 3). They adopted a fixed effect model as it is without significant heterogeneity" Who adopted the fixed-effect model? Who "They" are? 5. Line 218. "There is no doubt that the prognostic value of AAPR is definitely more powerful than ALB or ALP alone." What is the evidence for "AAPR is definitely more powerful" than ALB or ALP based on the stated findings? Also, the authors quoted that lower ALB may result in poorer anti-cancer response (i.e., positive correlation). How about ALP? Whether it's positive or negative to anti-cancer response. 6. Line 220. "AAPR can help the clinicians to distinguish the cancer patients with a high risk of poor OS prior to the implementation of therapy, which could help to provide accurate and personalized therapy." In which way AAPR can help provide accurate and personalized therapy? The authors may elaborate more. 7. Suggest to include the forest plots for other outcomes, putting as supplementary information would be sufficient. 8. Line 179-180. Why the HRs were negative? 9. Line 182. "Analysis on sensitivity" What kind of sensitivity were analysed? 10. Line 194. "Subgroup analysis also indicated that AAPR over the cutoff value could forecast better OS" What was the "cutoff value"? 11. Figure 2. The text of header can be put in one-line rather than in two lines. Put more tick marks on the x-axis, not available even for the pooled HR. Not sure whether the x-axis is in linear or log scale. 12. Figure 3. The text is unreadable. Wonder whether the authors have checked the proofread PDF. There is plenty of space for bigger font size. Same issues as Figure 2 on the header and tick marks of x-axis. 13. Figure 5. The horizontal lines which show the estimates were almost invisible. What does x-axis refer to? What do the two vertical lines at -0.76 and -0.54 refer to? No need to assign background color for the plot. Other comments. 1. Line 18-19. "... the albumin and alkaline phosphatase ratio (AAPR) for pretreatment is a prognostic factor". Perhaps it's better rephrased as "...the pretreatment albumin and alkaline phosphatase ratio (AAPR)..." 2. Line 25. "Results: In conclusions, this meta-analysis..." Not to use the term "In conclusions" in Results section, when this is not necessary. 3. Line 27. I think the "HRs" should be "pooled HRs", as to clarify that they were obtained from meta-analysis. Similar for "ORs" in the same paragraph. 4. Line 54. State the term of AAPR again when it's first used in the main text. Same for DFS, OS, HR, OR and CI, though they are well-known terms. 5. No need to capitalize the "carcinoma" and "meta-analysis" (e.g., top of page 10 and Table 1). 6. Cut-off or cutoff? Be consistent throughout the manuscript. 7. Line 100. What does AGR refer to? 8. Line 101-103. "Meta-analyses using variables including lymph node metastasis, infiltration and distant metastasis were conducted for further investigations." lymph node metastasis and distant metastasis should be the outcomes rather than variables 9. Not to start sentences with digits, e.g., 448 potential articles were ... 10. Line 123. "Thirteen ones reported the relationship between AAPR and OS, and only three ones presented the association between AAPR and DFS." Don't use the word "ones" when there is alternative available that will not confuse the readers. For example, the authors could say "Thirteen studies / items / research / etc..." 11. Perhaps two decimal places are sufficient for non-statistically significant p-values and for HR / OR. 12. Line 190. "The results of these studies showed that the high AAPR would lead to better OS and DFS (HR=0.523, 0.554) in cancer patients, which means that cancer patients with low pretreatment AAPR would have lower OS/DFS due to the increased cancer recurrence/progression rate." The second statement (lower AAPR and lower OS/DFS) basically repeated the first statement (high AAPR and better OS / DFS). 13. Line 204. What was "ALB" referred to? 14. The authors are suggested to check the typos. Reviewer #3: This study used meta-analysis focusing on the albumin and alkaline phosphatase ratio (AAPR) prognostic value. The results of this meta-analysis indicated that high AAPR could result in better DFS and OS. Moreover, high AAPR would result in lighter infiltration and negative metastasis of lymph nodes without distant metastasis. Despite the limitation of sample size and diversity, this study indicate that AAPR can help the clinicians to distinguish the cancer patients with a high risk of poor OS prior to the implementation of therapy, which could help to provide accurate and personalized therapy. Here is a suggestion: Could the authors do the meta-analysis with albumin or alkaline phosphatase only in the same way, compare the results with AAPR and use them as kind of system control? Reviewer #4: The authors present a meta-analysis of the prognostic effect of pretreatment albumin-to-alkaline phosphatase ratio in cancer patients. The meta-analysis included 13 studies, all conducted in Asia and found higher ratios associated with better overall survival (OS) and disease-free survival (DFS). The manuscript will be strengthened if the authors consider the following points. 1. The authors state that one of the inclusion criteria was that "there was an association of AAPR in serum with DFS and/or OS..." (lines 74-75). Do the authors mean to say this or do they mean to say something along the lines of "the association of AAPR in serum with DFS and/or OS was evaluated"? As stated in the manuscript, this would suggest that AAPR had to be significantly associated with survival in order to be included, which would be problematic if that was actually required. 2. Figure 1: authors say that 19 full-text articles were reviewed for eligibility and 7 were then excluded, which would be 12 articles eligible for inclusion instead of 13 - this should be clarified. 3. Table 2: a note should be included under the table to clarify for the reader which cancers fell into the different cancer systems - not all readers will be familiar with the different cancers. 4. Table 2: Why do the number of patients across the cancer systems not add to the total number of patients? All studies evaluated OS and since there is an "Others" category, all patients should be included. 5. Forest plots should be included in supplemental material for the results in Table 3 and the section beginning on line 159, since there is no information anywhere about which studies evaluated the clinical factors. The forest plots will allow the reader to have more information about the individual study results in addition to the presented combined results. Minor points: 1. line 20: "of on cancer" should be "on cancer" 2. line 42: "were dead" - should this be "died"? I'm assuming that is what the authors meant. 3. line 47: "complexly disorder" should be "complex disorder" 4. line 56: I believe authors mean to say "predict" rather than "predicate" 5. line 56: authors should define OS (although they define it in the Abstract, it should be defined the first time it is used in the body of the manuscript. Similar for DFS (on line 75). 6. line 57: "evidences have showed" should be "evidence has shown" 7. line 59: "renal cell carcinom" should be "renal cell carcinoma" 8. line 69: "may be used" should be "were used" since this describes what the authors actually did. 9. Authors might consider including the details of the NOS for each study in a supplemental table so that readers know more about the quality of the studies. 10. line 100 - what is AGR? 11. line 108: STATA should be Stata (https://www.statalist.org/forums/help#spelling) 12. line 117: "literatures" should be "literature" 13. lines 123-124: replace "ones" with "studies" 14. line 142: "was showed" should be "was shown" 15. line 150: remove "Obviously" 16. Figure 3: the authors should increase the font size or do something about the clarity of the text in this figure. It is not as legible as the other figures. 17. line 161: rephrase the sentence starting with "They adopted..." as it is awkwardly phrased. 18. line 163: "coved" should be "covered" 19. line 165: "could lead to negative metastasis" should be rephrased - maybe something similar to "was associated with no metastasis" 20. line 167: remove "obviously" 21. line 168: change "ones" to "studies" 22. lines 179-180 - the reported HR and 95% CI are actually the betas and the corresponding CI (hazard ratios cannot be negative), so this should be clarified - the authors can transform the beta and CI to correspond to the HR, which might be easier for the reader to follow. 23. line 189: "maker" should be "marker" 24. line 196: the authors highlight surgery, but other the subgroup analysis for the other treatment strategies also showed a beneficial association of high AAPR on survival. There was just a sufficient number of studies to look specifically at surgery. 25. line 204: "evidences" should be "evidence" and authors should be consistent about abbreviations - here they use ALB, but they have also used Alb. 26. line 208: "literatures" should be"literature" ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No Reviewer #4: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Prognostic effect of pretreatment albumin-to-alkaline phosphatase ratio in human cancers: a meta-analysis PONE-D-20-05632R1 Dear Dr. Gu, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Jason Chia-Hsun Hsieh, M.D. Ph.D Academic Editor PLOS ONE Additional Editor Comments (optional): All the questions were answered adequately. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This current version (#2) of Guo et al is much improved. The authors have largely addressed the comments/questions raised with discussion and the inclusion of new experiments/controls, which made this study stronger and better-suited for publication in PLOS ONE. Reviewer #3: All comments have been well addressed and I feel that the manuscript is now acceptable for publication. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #3: No |
| Formally Accepted |
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PONE-D-20-05632R1 Prognostic effect of pretreatment albumin-to-alkaline phosphatase ratio in human cancers: a meta-analysis Dear Dr. Gu: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Jason Chia-Hsun Hsieh Academic Editor PLOS ONE |
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