Peer Review History
| Original SubmissionJuly 26, 2020 |
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PONE-D-20-23236 Livestock grazing is associated with seasonal reduction in pollinator biodiversity and functional dispersion but cheatgrass invasion is not: variation in bee assemblages in a multi-use shortgrass prairie PLOS ONE Dear Dr. Thomas Seth Davis Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by 30 October. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Kleber Del-Claro, PhD Academic Editor PLOS ONE Additional Editor Comments: I strongly ask you to consider and answer the reviewers criticism, mainly : "The results are interesting, although it seems that the authors have not fully addressed their main finding, which seems to indicate that cheatgrass invaded sites support the highest bee numbers. It may also be that the sample size is too small to draw final conclusions about the effect of the habitat types studied. Somewhat problematic is the use of two habitat types that are not completely separated: Both non-grazed sites and sites invaded by cheatgrass are not grazed. The cheatgrass category is simply a subcategory of non-grazed sites, which is also indicated by NMDS, which shows the highest similarity between cheatgrass assemblages. " I suggest you to answer it clearly. Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. In your Methods section, please provide additional location information of the study sites, including geographic coordinates for the data set if available. 3. In your Methods section, please provide additional information regarding the permits you obtained for the work. Please ensure you have included the full name of the authority that approved the field site access and, if no permits were required, a brief statement explaining why. 4. Please ensure that you refer to Figure 1 in your text as, if accepted, production will need this reference to link the reader to the figure. 5. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript “Livestock grazing is associated with seasonal reduction in pollinator biodiversity and functional dispersion but cheatgrass invasion is not: variation in bee assemblages in a multi-use shortgrass prairie” by Khum Bahadur Thapa-Magar and colleagues deals with an important and current topic, the role of grazing and the presence of invasive grass (cheatgrass - Bromus tectorum and B. japonicum) on bee assemblages. The manuscript is well written and the data are analyzed in a meaningful way. The study indicates that cattle grazing has a more negative impact on bee abundance and diversity than the increased occurrence of invasive cheatgrass. On the contrary, the sites dominated by cheatgrass even seemed to promote the highest number of bee individuals and species. In addition to the effects of the habitat categories (1) cattle pasture, (2) non-grazed sites dominated by cheatgrass, and (3) non-grazed sites without cheatgrass, other environmental variables related to foraging (e.g. flower cover) and nesting (e.g. bare ground cover and wood/litter material) were analyzed and were related to bee diversity and assemblage characteristics. The following points can be considered to further improve the manuscript: General comments: 1. since it is of central importance for the entire study, the definition and naming of the three habitat (site) categories must be clarified. As I understood, the two categories "cheatgrass-colonized" and "non-grazed" are not grazed by cattle. However, the naming and consideration in many parts of the manuscript leave the impression that "non-grazed" is a unique feature. It rather seems that "cheatgrass-colonized" is only a subcategory of "non-grazed". This has to be addressed more clearly throughout the manuscript (also in the presentation and interpretation of the results). For example, it is also indicated in the results, where NMDS indicates that "cheatgrass assemblages" are most similar to each other... 2. it seems that 'cheatgrass sites' support the highest number of bee individuals and species (also compared to non-grazed sites without cheatgrass). This finding would be interesting, but it is not clear (a) whether there is a statistically significant difference, as paired testing between habitats in terms of numbers and species richness seems to be missing and (b) how this difference could be explained. Here it might be helpful to consider the role of the different habitats either for foraging or for nesting. 3. if no differences in bee numbers between habitat types can be demonstrated, the authors should indicate whether the sample size (n=10) might be too small for final conclusions. Specific comments: l. 21: nesting habitats: what about bare soil as nesting habitat for below-ground nesting bees? l. 25: how was bee diversity in the late season compared to early/peak season? Is a reduced difference explained by reduction of bee species richness? Are only some very generalistic bees left at the end of the season? l. 33:…and our STUDY suggests… (add “study”) l. 74: which “mechanisms” seem probable? Could be outlined at least a little; e.g. replacement of forbs that are used as foraging or nesting resource by grasses that may not provide food or useful nest-site structures… l. 82: functional traits not explicitly introduced: it should be mentioned before why foraging and nesting resources may be linked to certain functional traits l. 98: are grasses in natural (conservation) areas grazed by any mammalian herbivore? Larger mammalian herbivores? Otherwise ‘non-grazed’ may represent a more “artificial, manmade” situation than ‘grazed’ by suitable cattle densities, as in a “natural” situation grazing by bison, elk, pronghorn etc. would at least temporarily occur. This aspect might be considered also for the interpretation of the data. l. 103 or elsewhere: the size or size range of patches of the different habitat types need to be mentioned. Are patches so small that traps might be attracting bees from different habitat types, or are all bees in a trap based in the specific habitat? Is it possible to state whether bees collected in a specific habitat used the habitat rather for foraging or for nesting? l. 113: method to quantify floral cover might be explained in some more detail. What does it mean ‘proportion of forb contacts…’? l. 142-144: body size traits of 10 specimens of 49 species: is it correct that no rare species with less than 10 individuals (5f, 5m) were found? This seems to be remarkable and might be addressed in the discussion. l. 188 and other places: what are bee community assemblages? Restrict to “bee assemblage” or “bee community”. I would suggest ‘assemblage’, as collected bees are probably no community in the strict sense (check definition of assemblage vs. community in the context of groups of interacting organisms…). l. 210: it should be explained why it is meaningful to analyse the question whether non-grazed sites have lower cheatgrass cover than cheat-grass sites. Is this a result or rather should be shown in materials/methods? l. 225-232: it should be shown more explicitly which habitat categories are different. Based on Figure 2, ‘cheatgrass’ seems to support the highest number of bee individuals and bee species. Is this difference significant and if yes, to different to which category? l. 258-280: this section provides many results without clear coverage by statistical tests. It needs to be explained whether and how all these results are derived from Figure 5, or further tests should be provided. l. 303: is it high floral cover or type/species of flowering plant? Preponderance of bumble bees in sites characterised by high floral cover indicates/suggests that not only floral availability but also specific characteristics of flowers might be different between these sites. Can information on plant taxa be provided and used for discussion whether plant identity might have an explanatory potential? l. 348: the current study has not (systematically) compared different grazing intensities of cattle (as suggested by the reference to intermediate grazing as the best prerequisite for high availability of floral resources); it cannot therefore make any statements about the role of grazing intensity, which is likely to have a strong impact… l. 360: as cattle density / grazing intensity is highly important for effects of grazing on flower availability, this always needs to be considered. Can comparison/discussion for different cattle densities be provided? Reviewer #2: For this work it is important to use a passive method, which equalize the effort. So, I understand that the use of a trap is essencial. But, since this blue vane trap is not widespread among the bee biologists, please provide some comments about the equal efficient of this trap and if there is a bias to any bee group (as occurs in pantraps). For Table 2 I suggest to include the 3 habitat types and then provide the abundance of the species for each. Please, revise the traits or the interpretation assumed to the cleptoparasite bees since they can attack different bee species (solitary (most probably) and social), they eat the avaliable pollen they found in the brood cell (being oligoletic or polyletic), visit different plants for nectar and they do not collect pollen (for sure no scopa). ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Livestock grazing is associated with seasonal reduction in pollinator biodiversity and functional dispersion but cheatgrass invasion is not: variation in bee assemblages in a multi-use shortgrass prairie PONE-D-20-23236R1 Dear Dr. Thomas Seth Davis, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Kleber Del-Claro, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: (No Response) Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: (No Response) Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: (No Response) Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: (No Response) Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No |
| Formally Accepted |
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PONE-D-20-23236R1 Livestock grazing is associated with seasonal reduction in pollinator biodiversity and functional dispersion but cheatgrass invasion is not: variation in bee assemblages in a multi-use shortgrass prairie Dear Dr. Davis: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Kleber Del-Claro Academic Editor PLOS ONE |
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