Peer Review History

Original SubmissionMay 2, 2020
Decision Letter - Oscar Millet, Editor

PONE-D-20-12922

Association of worsening of nonalcoholic fatty liver disease with cardiometabolic function and intestinal bacterial overgrowth: a cross-sectional study

PLOS ONE

Dear Dr. Brito Alves,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

There is a number of issues that have to be addressed before the manuscript becomes acceptable. Please make sure that all the issues raised by the reviewer are properly addressed in the revised version.

Please submit your revised manuscript by Aug 30 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

We look forward to receiving your revised manuscript.

Kind regards,

Oscar Millet

Academic Editor

PLOS ONE

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2.  Thank you for stating the following financial disclosure:

"The funders had no role in study design, data collection and analysis, decision to

publish, or preparation of the manuscript."

At this time, please address the following queries:

a) Please clarify the sources of funding (financial or material support) for your study. List the grants or organizations that supported your study, including funding received from your institution.

b) State what role the funders took in the study. If the funders had no role in your study, please state: “The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.”

c) If any authors received a salary from any of your funders, please state which authors and which funders.

d) If you did not receive any funding for this study, please state: “The authors received no specific funding for this work.”

Please include your amended statements within your cover letter; we will change the online submission form on your behalf.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: No

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The authors present a study whose main objective is to test if worsening of NAFLD is associated with cardiac dysfunction, intestinal bacterial overgrowth or metabolic impairment. They considered the risk of advanced fibrosis as worsening criteria for NAFLD. This risk was measured with a known noninvasive method (NFS), which was applied only to NAFLD patients that were diagnosed by abdominal imaging. The NAFLD cohort was complemented with a small control cohort of healthy subjects. For both cohorts, they obtained anthropometric parameters, blood pressure and ECG analysis. For NAFLD cohort, also biochemical analysis and hydrogen breath tests were performed. They did not find differences of bacterial overgrowth regarding advanced fibrosis risk. Biochemical analysis showed some differences for platelets, albumin and GGT. In the case of heart variability measures, they only found differences between low risk and high risk for HF parameter and LF/HF ratio.

In my opinion, it is a well-explained, honest and rigorous study whose results are of interest for scientific community. Although the study found a small set of differences between low risk and high risk of advanced fibrosis, also the lack of differences in other parameters is itself a result. Therefore, I consider this manuscript is acceptable for publication with minor revisions:

1) Line 106: “Non-Alcoholic Fatty Liver Disease (defined by imaging or histology, and lack of secondary causes of hepatic fat accumulation)”. Could you provide more information about the specific criteria to diagnose NAFLD?

2) Could you explain why -1,455 is used as NFS cutoff value for high risk of advanced fibrosis?

3) There is a big age difference between control group and NAFLD groups. Could you explain why did you select a control group younger than NAFLD group?

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 1

Reviewer #1: The authors present a study whose main objective is to test if worsening of NAFLD is associated with cardiac dysfunction, intestinal bacterial overgrowth or metabolic impairment. They considered the risk of advanced fibrosis as worsening criteria for NAFLD. This risk was measured with a known noninvasive method (NFS), which was applied only to NAFLD patients that were diagnosed by abdominal imaging. The NAFLD cohort was complemented with a small control cohort of healthy subjects. For both cohorts, they obtained anthropometric parameters, blood pressure and ECG analysis. For NAFLD cohort, also biochemical analysis and hydrogen breath tests were performed. They did not find differences of bacterial overgrowth regarding advanced fibrosis risk. Biochemical analysis showed some differences for platelets, albumin and GGT. In the case of heart variability measures, they only found differences between low risk and high risk for HF parameter and LF/HF ratio.

In my opinion, it is a well-explained, honest and rigorous study whose results are of interest for scientific community. Although the study found a small set of differences between low risk and high risk of advanced fibrosis, also the lack of differences in other parameters is itself a result. Therefore, I consider this manuscript is acceptable for publication with minor revisions:

Answer: We would like to thank the reviewer 1 for recognizing the relevance of our work and the opportunity to improve our manuscript.

1) Line 106: “Non-Alcoholic Fatty Liver Disease (defined by imaging or histology, and lack of secondary causes of hepatic fat accumulation)”. Could you provide more information about the specific criteria to diagnose NAFLD?

Answer: We appreciate this observation. For the NAFLD diagnosis we used abdominal ultrasound, carried out by specialist, as a first line diagnostic method. We considered mild hepatic steatosis or grade 1 when a slight and diffuse increase in hepatic echogenicity was noticed with normal visualization of the intrahepatic vessels and the diaphragm. Moderate or grade 2 hepatic steatosis was defined by a moderate and diffuse increase in echogenicity and blurring in the visualization of intrahepatic vessels and the diaphragm. Marked hepatic steatosis or grade 3 was diagnosed by a marked increase in echogenicity of the liver parenchyma associated with poor or non-visualization of intrahepatic vessels, diaphragm and posterior region of the liver.

In revised version, we have added the sentence: “The diagnosis of NAFLD was performed by abdominal ultrasound and carried for physicians with experience in imaging diagnosis of liver steatosis. In addition, one subject had a liver biopsy confirming their NAFLD diagnosis. All subjects recruited for the study tested negative for viral serology (B and C hepatitis) and denied significant alcohol consumption. Significant alcohol consumption was defined as > 21 doses per week for men and > 14 doses per week for women over a 2-year period prior to inclusion in the study [13].

2) Could you explain why -1,455 is used as NFS cutoff value for high risk of advanced fibrosis?

Answer: We would like to thank the reviewer 1 for this observation. In revised version, we have explained the reason for use -1,455 as NFS cutoff value for high risk of advanced fibrosis. In pag 6, lines 129-143, we have added: “The NFS is based on age, hyperglycemia, BMI, platelet count, albumin level, and AST/ALT ratio and has been recognized as a clinically useful tool for identifying advanced fibrosis in patients with NAFLD [13]. It has been demonstrated that a score less than -1.455 have 90% sensitivity and 60% specificity to exclude advanced fibrosis, whereas a score >0.676 have 67% sensitivity and 97% specificity to identify the presence of advanced fibrosis [13]. Considering the impossibility of staging liver fibrosis by biopsy into intermediate risk category (cutoff -1.455 – 0.676) and recognizing that the subjects of the intermediate and high risk are at higher risk for diabetes mellitus, cardiovascular diseases and overall mortality [14], we decided allocate the subjects of intermediate and high categories into a single category. Thus, cutoff less than -1.455 was used to classify subjects as low risk of advanced fibrosis, while cutoff greater than -1.455 was used to classify subjects as high risk advanced fibrosis. This was performed to access whether the worsening of nonalcoholic fatty liver disease could impair cardiometabolic function and intestinal bacterial overgrowth of those patients.”

3) There is a big age difference between control group and NAFLD groups. Could you explain why did you select a control group younger than NAFLD group?

Answer: We would like to thank the reviewer 1 for this observation. Previous studies have demonstrated that HRV change with age and gender. Then, our main reason when we performed the recruitment of patients was try to reduce the effect of age on HRV measurements and have results that reflected the HRV parameters in a healthy population and not provoked by advancing age. Lastly, for greater control of the results obtained in present study, we performed a one-way ANCOVA test with correction for age and gender. This gives us a more control to affirm that our findings are not being modulated by age or gender.

Attachments
Attachment
Submitted filename: Response to reviewer _OK.docx
Decision Letter - Oscar Millet, Editor

Association of worsening of nonalcoholic fatty liver disease with cardiometabolic function and intestinal bacterial overgrowth: a cross-sectional study

PONE-D-20-12922R1

Dear Dr. Brito Alves,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Oscar Millet

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Formally Accepted
Acceptance Letter - Oscar Millet, Editor

PONE-D-20-12922R1

Association of worsening of nonalcoholic fatty liver disease with cardiometabolic function and intestinal bacterial overgrowth: a cross-sectional study

Dear Dr. de Brito Alves:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Oscar Millet

Academic Editor

PLOS ONE

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .