Peer Review History

Original SubmissionApril 30, 2020
Decision Letter - Hiroyuki Itabe, Editor

PONE-D-20-12583

Association of single nucleotide polymorphisms in the NRF2 promoter with vascular stiffness with aging

PLOS ONE

Dear Dr. Itoh,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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ACADEMIC EDITOR:

Thank you for submitting your manuscript to PLoS ONE. Although the evaluations by two reviewers were favorable, there are several comments and questions. I would like you to check the manucript carefully and respond to all of them.

Please ensure that your decision is justified on PLOS ONE’s publication criteria and not, for example, on novelty or perceived impact.

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We look forward to receiving your revised manuscript.

Kind regards,

Hiroyuki Itabe, Ph.D.

Academic Editor

PLOS ONE

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"This work was supported by "Center for Innovation Program" of the Japan Science and Technology Agency Grant Number JPMJCE1302 (to SN and KI).

SN: Shigeyuki Nakaji, KI: Ken Itoh.

URL (https://www.jst.go.jp/EN/index.html)

The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."

   

We note that one or more of the authors are employed by a commercial company: 'Kagome Co., Ltd.'

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

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3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

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4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

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5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Authors conducted well designed study with enough subject number. Results from their study enhanced new insight into roll of Nrf2 in atherosclerosis. This reaches standards of published in peer-reviewed journal. Thank you.

Reviewer #2: The authors examined baPWV, an indicator of vascular stiffness and SNPs in the NRF gene SNP-617 and showed the clear association of NRF activity and arterial stiffness. However, some issues written below are still concerned.

Major:

1. The authors showed the clear relationship between baPWA and SNP-617 in people under 60 years old. However, if it is true, this relationship should become clearer in people over 60 years old, which may become more important in terms of prevention of cardiovascular disease.

2. Although the authors described in the limitation of the study, it is not clear whether there is a gender difference in the results of baPWV, SBP, MAP and PP.

3. It is relatively easy to understand there is a relationship between SNP-617 and arterial stiffness, but hard to connect it to creatinine and HDL cholesterol levels.

Minor:

1. P6, l11 oxidative stress: under the condition of oxidative stress?

2. P10, l5 SBP pressure: delete pressure

3. P13, l14 CA, 1317/1169-1589: change to AA,

4. P14, l16 *p<0.01: change to **p<0.01

5. P22, l16 creatinine HDL cholesterol: insert and between creatinine and HDL cholesterol

6. P22, l18 AA, CA, and CC: change to AA, CA and CC

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Reviewer #1: No

Reviewer #2: No

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Revision 1

Dear Dr. Itabe,

Thank you for your email of 27th May 2020 regarding our manuscript entitled "Association of single nucleotide polymorphisms in the NRF2 promoter with vascular stiffness with aging " and for providing us an opportunity to revise it.

We appreciate for the insightful and straightforward comments from the reviewers. Responding to the reviewers’ comments, we added the description to fully discuss the reviewers’ concerns in the “Discussion” section. As a result, we believed that the manuscript has significantly improved. Please refer to the following “response to the reviewers’ comments” for the details.

I appreciate for your kind consideration of the revised manuscript and look forward to hearing from you at your earliest convenience.

Yours sincerely

Response to reviewers’ comments

Reviewer #1

Authors conducted well designed study with enough subject number. Results from their study enhanced new insight into roll of Nrf2 in atherosclerosis. This reaches standards of published in peer-reviewed journal. Thank you.

Response: Thank you for the comment and we appreciate for your evaluation.

Reviewer #2

The authors examined baPWV, an indicator of vascular stiffness and SNPs in the NRF gene SNP-617 and showed the clear association of NRF activity and arterial stiffness. However, some issues written below are still concerned.

Response: Thank for your evaluation of the manuscript and insightful and straightforward comments.

Major:

1. The authors showed the clear relationship between baPWA and SNP-617 in people under 60 years old. However, if it is true, this relationship should become clearer in people over 60 years old, which may become more important in terms of prevention of cardiovascular disease.

Response: Thank you for the comment. We consider that there are two main reasons why the relationship between baPWV, SNP−617 and age are not significant over 60 years old. One is selection bias and the other is insufficient statistical power. Accordingly, we added the description in the Discussion section (page 25, sentence 430 to 440 in the revised manuscript with track change).

2. Although the authors described in the limitation of the study, it is not clear whether there is a gender difference in the results of baPWV, SBP, MAP and PP.

Response: Thank you for the comment. Because the results in male contain similar analytical limitations as the analysis of the older subjects (i. e. selection bias and insufficient statistical power), we consider that this study couldn’t reveal gender differences in relationship between SNP−617 and baPWV. Therefore, we added the explanation in Discussion section (page 24, sentence 407 to 420 in the revised manuscript with track change)

3. It is relatively easy to understand there is a relationship between SNP-617 and arterial stiffness, but hard to connect it to creatinine and HDL cholesterol levels.

Response: Thank you for the comment. We have added some additional discussion about the results of creatinine and HDL cholesterol in the Discussion section (page 23, sentence 383 to 403 in the revised manuscript with track change).

Minor:

1. P6, l11 oxidative stress: under the condition of oxidative stress?

Response: Thank you for the comment. We have corrected the manuscript.

2. P10, l5 SBP pressure: delete pressure

Response: Thank you for the comment. We have corrected the manuscript.

3. P13, l14 CA, 1317/1169-1589: change to AA,

Response: Thank you for the comment. We have corrected the manuscript.

4. P14, l16 *p<0.01: change to **p<0.01

Response: Thank you for the comment. We have corrected the manuscript.

5. P22, l16 creatinine HDL cholesterol: insert and between creatinine and HDL cholesterol

Response: Thank you for the comment. We have corrected the manuscript.

6. P22, l18 AA, CA, and CC: change to AA, CA and CC

Response: Thank you for the comment. We have corrected the manuscript.

Attachments
Attachment
Submitted filename: Shimizu_et_al._Response to Reviewers.docx
Decision Letter - Hiroyuki Itabe, Editor

Association of single nucleotide polymorphisms in the NRF2 promoter with vascular stiffness with aging

PONE-D-20-12583R1

Dear Dr. Itoh,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Hiroyuki Itabe, Ph.D.

Academic Editor

PLOS ONE

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #2: All comments have been addressed

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2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #2: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #2: The authors have appropriately addressed all comments the reviewers made and have revised the manuscript well.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #2: No

Formally Accepted
Acceptance Letter - Hiroyuki Itabe, Editor

PONE-D-20-12583R1

Association of single nucleotide polymorphisms in the NRF2 promoter with vascular stiffness with aging

Dear Dr. Itoh:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Hiroyuki Itabe

Academic Editor

PLOS ONE

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