Peer Review History
| Original SubmissionJuly 11, 2020 |
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PONE-D-20-21548 Establishment of Reference Intervals of Clinical Chemistry Analytes for the Adult Population in Egypt PLOS ONE Dear Dr. Ichihara, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. A response to reviewers should point out the page and what you change in the manuscript. Please submit your revised manuscript by Nov 02 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. We will update your Data Availability statement on your behalf to reflect the information you provide. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: First the topic is so interesting and the benefits derived from it would be so important in the future. 1/ adult population includes those >65 years but this age class was some kind of ''ignored'' throughout the whole study, not even age and gender equalization was done for this class justify this please ? 2/ Are areas of origin of participant representative of all the country ? 3/ Was a sample size evaluation done before conducting the study ? 4/ The health status questionnaire provided for participant please provide a copy of it so that we can evaluate the sample 5/ So only two laboratories agreed to participate or were they the only ''reference'' lab , else how were participants divided between them ? 6/ Suppl table 3 and table 2 no age>65 y provided 7/ Suppl table 3 why stratifying by age 45y ? 8/ Method for calculating eGFR, aCa, TIBC, HDL were not provided 9/ assay timeline for samples collected of 2-3 months and 8 months reference for that please ? 10/ Dividing Egypt into North and South was done according to what reference ? 11/ Please mention clearly inclusion and exclusion criteria of participants as no criteria provided 12/ ''did not deny alcohol drinking'' and low smoking status (mainly female++) --> Response Bias suspected else what about other drugs consumption ? was a thorough history of patients done before with the questionnaire? 13/ Supp fig1 ''Asn val'' stands for what ? 14/ Discussion Not well elaborated and lacks many referencing *I was expecting a reference on the prevalence of obesity in Egypt *i was expecting a reference on the prevalence of smoking, alcohol drinking, drugs consumption, and other habits in the population so that was evaluate if the sample results are possible to generalize to the whole population * bilirub level reduced--> maybe a reference on the prevalence of cholecystitis or cholangitis in Egypt * no relation between IgG and HDL provided a possible explanation or a reference for that 15/ NO stating of NEW results in the discussion section please like fig3 or the prevalence of metabolic syndrome (which by the way suppose you calculated BP and wrist circumference of the sample ??) ----> all results should be first mentioned in the results section Reviewer #2: please check below or the attached pdf file: Editor in Chief, PLOS ONE Establishment of Reference Intervals of Clinical Chemistry Analytes for the Adult Population in Egypt PONE-D-20-21548 Reviewer(s)' Comments to Author: Reviewer: Comments to the Author The manuscript established the reference interval for 34 major chemistry analytes and discussed the sources of variation. The study is part of the global reference interval study of the IFCC. The manuscript has many details about data analysis but some core aspects have weakened the manuscript which need to be answered and corrected. Specific comments Manuscript: Material and methods 1. Study design - The study was performed in two different institutes. Therefore, the ethical approval number should be unified but it seems Cairo University ethical approval number only has been mentioned. What about Medical Research Institute of Alexandria University was there any specific ethical approval number? If yes then please mention it. 2. Recruitment of reference individuals “A total of 691 apparently healthy Egyptian volunteers were recruited from Cairo, Alexandria, Delta, Suez Canal, and Upper Egypt; Fayoum, Beni-Sueif or areas southern as faras Nubia”. It is not so clear if samples were collected from volunteers from each of these locations or volunteers came to one cite for samples to be collected. 4. Analytes and measurements - Page 2: Suppl table 1: does not show the formulae for the calculated parameters Globulins (Glb), estimated glomerular filtration rate (eGFR), adjusted calcium (aCa), total iron binding capacity (TIBC), and non-high-density lipoprotein (nonHDL). - PTH is the only anlyte based on immunoassay measurement. Why it has been included in this study in particular while the study is dedicated to chemistry tests? - PTH can be affected by calcium and vitamin D intake, did the author consider them when RI for PTH has been derived (as exclusion criteria). The same thing for Iron. If yes, then how many subjects were excluded? - When the study was started (month/year) and when it was ended (month/year)? - Page 3: IgG, IgM, IgA, C3, C4, CRP and PTH were measured 8 months after the collection, why and how their stability was assessed? 5. Between-center method comparison and standardization - A panel composed of 50 healthy volunteers' sera with assigned values for 34 chemistry and immunoturbidimetry analytes was measured by the two different centers for merging and standardization of test results. How this panel of samples was transferred physically from one center to another? And how their stability was guaranteed? - A summarized table is needed to show number of samples, BMI, sex distribution, age, BP and other anthropometric measurements for each cite and in total. - In this study, samples were analyzed in two independent labs. The panel was used to standardize test results between both cites. In other involved countries in the global study all samples were sent to the main lab for analysis and a panel was used to standardize results between different labs. Clarify if the protocol followed in this study contradicts the harmonized protocol created by the C-RIDL or not. - For between-day quality control, no data are shown. Results: - Page 6: The head title in Table 1 “South Egy” to be changes to “Region”. - Table 3: TBil and DBil unit mmol/L to be corrected TP, Alb, Glb unit g/L to be corrected in RI in conv, unit. - Page 9: Supp Fig 3 shows low glucose, DBil and TBil for samples from South Egypt. In addition to this in Figure 2, TBil is the lowest compared to other countries (Glu is not included in the figure). It seems these outcomes are not compatible with the prevalence and rates of diabetes and hepatitis in Egypt compared to other countries. Did the author investigate the possibility of the presence of any gap in the followed C-RIDL protocol regarding samples integrity i.e. during samples collection, transportation, delay in separation, sun exposure etc. before samples were analysed. Discussion: - Page 12: “Mean BMI in our study was 28.2±5.0” the unit needs to be added ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Nacir Dhouibi Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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Establishment of Reference Intervals of Clinical Chemistry Analytes for the Adult Population in Egypt PONE-D-20-21548R1 Dear Dr. Ichihara, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Colin Johnson, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: This manuscript represents the conclusion of authors' hard work. Thanks for addressing all points as your responses were acceptable and satisfied. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Nacir Dhouibi Reviewer #2: Yes: Dr Anwar Borai, King Abdullah International Medical Research Center, King Saud bin Abdulaziz University for Health Sciences, Pathology, King Abdulaziz Medical City, Jeddah, Saudi Arabia. |
| Formally Accepted |
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PONE-D-20-21548R1 Establishment of Reference Intervals of Clinical Chemistry Analytes for the Adult Population in Egypt Dear Dr. Ichihara: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Colin Johnson Academic Editor PLOS ONE |
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