Peer Review History
| Original SubmissionJuly 16, 2019 |
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PONE-D-19-20027 We have the (1-β)! Requirements in preregistrations and IRB proposals promote formal power analyses PLOS ONE Dear Dr. Bakker, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. As you will see, the reviewers differed in their comments about the merits and limitations of your paper, and both expressed a number of important issues. I have read the manuscript very carefully and found it very interesting and highly relevant. However, I agree with the reviewers that the original contribution of the study should be better specified (in the Introduction and in the Conclusion), and the results more deeply explained. Additionally, we recommend to fully revise the manuscript according to reviewers' minor suggestions. All the comments are enclosed for your information. We would appreciate receiving your revised manuscript by Feb 02 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Mariagrazia Benassi Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements: 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.plosone.org/attachments/PLOSOne_formatting_sample_main_body.pdf and http://www.plosone.org/attachments/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. We noticed you have some minor occurrence of overlapping text with the following previous publication, which needs to be addressed: Bakker, Marjan, et al. "Researchers’ intuitions about power in psychological research." Psychological science 27.8 (2016): 10. In your revision ensure you cite all your sources (including your own works), and quote or rephrase any duplicated text outside the methods section. Further consideration is dependent on these concerns being addressed. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In this preregistered study, the authors tested the effects of pre-registration type (OSF Standard Pre-Data Collection, OSF Prereg Challenge, Tilburg School of Behavioral and Social Sciences Institutional Review Board proposal) on researchers’ decisions about the rationale for the determination of sample size (e.g., whether a power analysis is conducted or not) and on the intended sample size. In line with the authors’ hypotheses, the results showed that the use of power analysis was more frequent in studies that were pre-registered according to the guidelines of OSF Prereg Challenge (PCR) form and of Tilburg School of Behavioral and Social Sciences Institutional Review Board (IRB) proposal than in studies that were pre-registered according to the guidelines of OSF Pre-Data Collection (SPR) form. Inconsistently with the authors’ hypotheses, the intended sample size was not affected by pre-registration type. The results also showed that power analyses are often characterized by technical mistakes and/or by incomplete descriptions. Overall the manuscript is clear and well-written, and it focuses on a highly debated issue such as the reliability of psychological research. I agree with the authors’ concerns and recommendations about the need for well-conducted power analyses to increase the reliability of psychological research. Nevertheless, as regards this specific study, I have some important concerns that preclude my recommendation for publication in Plos One. MAJOR POINTS 1) The possible impact of the results. It is unclear to me how the current study can contribute to the extant literature on research methods in psychology. The first result, which is in line with the authors’ expectation, is that power analysis is more likely to be performed when researchers are required to do it, but in my view, this just confirms the obvious. The second (and this time unexpected) finding is that pre-registration type does not appear to affect the intended sample size. The meaning of this finding remains obscure, but I suspect that it can be partly explained by the fact that, in SPRs, power analyses might have been conducted but not reported (see Major Point 3). The third result is that power analyses are often conducted in inappropriate ways (e.g., estimating effect size on a single previous study), and/or they are incorrectly reported. In my view, this is the most interesting and potentially useful outcome of this study, as it shows that simply recommending (or forcing) researchers to conduct a power analysis does not guarantee the reliability of psychological research. I believe that this manuscript would have been more interesting if it focused on this latter point. 2) The rationale of the pre-registered hypotheses and interpretation of the results. The authors suggest that both the IRB proposal and the PCR form require the participants to conduct a formal power analysis. However, as far as I could see from the OSF website, the PCR form (https://osf.io/dn3c4/) simply asks the researchers to clearly state the rationale for sample size determination. It appears that arbitrary constraints such as time and money are considered to be adequate justifications. Therefore, the PCR does not put that emphasis on power analysis, as it is instead suggested by the authors. On the contrary, power analysis probably plays a crucial role in the approval of IRB proposals. Therefore, I do not understand why the authors included PCRs and IRB proposals in the same group. These a priori objections are supported by the results, which show that the relative frequency of power analysis was much higher for IRB proposals (79%) than for PCRs (54%). On page 11, the authors affirm: “Our first hypothesis was supported; of the 207 PCRs and IRB proposals 150 (72%) made a power-based sample size decision, whereas 24 (45%) of the 53 SPRs made a power-based sample size decision …”. I believe that this is a highly misleading description of the results, due to the inappropriate averaging of the results for IRB proposals and PCRs. The percentage of PCRs in which a power analysis was performed (54%) was much more similar to that of SPRs (45%) than to that of IRB proposals (79%). I think that these objections cast severe doubts both on the rationale of the pre-registered hypotheses and on the interpretation of the results. 3) Interpretation of the results. I believe that there is some confusion between reporting and conducting a power analysis. For the PCRs and the IRB proposals, it seems reasonable to assume that if a power analysis was not reported then it had not been conducted. However, this assumption seems to be much less reasonable for the SPRs. Indeed, the SPR form does not require the researchers to specify the rationale for the determination of sample size, which leaves open the possibility that, at least in some cases, a power analysis was actually conducted but it was simply not reported. This appears to invalidate the rationale of the pre-registered hypotheses MINOR POINTS 1) Title: I believe that the use of acronyms should be avoided in the title. 2) Table 1, “Sample size based on…”: the sum of the percentages is much higher than 100%. Am I missing something? 3) Typos: Line 127: preregistration -> preregistrations Line 194: analysis -> analyses Line 398: hull -> full Reviewer #2: Review of Bakker et al., “We have the (1-B)! Requirements in preregistrations and IRB proposals promote formal power analyses”, submitted to PLoS ONE. Summary This study reports the likelihood that preregistration documents and IRB proposals incorporate a formal power analysis. It turns out that forms that request a power analysis are more likely to include one, but that this makes no difference to the proposed sample size. Some additional findings are reported regarding the amount of information provided and whether this is sufficient to reproduce the power analysis. The statistical analyses in the paper are conducted appropriately, and it is a topic of current interest given the drive to increase statistical power in empirical studies. I have some minor comments and suggestions. Specific points 1. From hypothesis 3, the study expected to find that documents involving a power analysis would result in studies with larger sample sizes. Had this prediction been supported by the data, it would have been good evidence favouring the use of power analysis in preregistration. Do the authors feel that the converse might be true? Does the lack of an effect on sample size mean that mandating power analysis at preregistration is not really a good way to increase power, or might the null result be a type 2 error? One way to distinguish these possibilities might be to calculate a Bayes Factor score. 2. Around line 163, the paper describes how a sample of 53 studies was generated from each of two types of preregistration. But it is (somewhat ironically given the topic of the paper) unclear at this point in the manuscript where this sample size comes from, and why it is much lower than the sample size for IRB proposals. 3. It is straightforward to convert between the effect sizes in Table 2 (and the other effect sizes not included in the table). Why not convert everything to an equivalent Cohen’s d, for easier comparison across columns and to increase the number of observations? 4. This is a matter of personal taste, but the first part of the title seems superfluous and gimicky to me. I’m not even sure what it really means - why do we have the power? 5. Line 62, the authors suggest that running well powered studies will ‘decrease the need’ for researchers to engage in questionable research practices. This perhaps needs rewording, as nobody ‘needs’ to engage in this sort of thing. 6. Line 91, the authors note that funded studies have larger sample sizes than those not receiving external funding. Worth noting explicitly the obvious explanation for this, that funded studies will generally have the resources to test a larger sample. 7. Line 146, not sure what ‘next to a’ means here, please reword for clarity. 8. Line 398: hull -> full? 9. Line 412: ‘priory’ should be ‘priori’ 10. Line 445: not sure what ‘effect size argumentation’ is. Do you mean the explanation of where the estimated effect size comes from? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Daniel H. Baker [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Recommendations in pre-registrations and internal review board proposals promote formal power analyses but do not increase sample size PONE-D-19-20027R1 Dear Dr. Bakker, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Mariagrazia Benassi Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: (No Response) Reviewer #2: (No Response) ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: (No Response) Reviewer #2: (No Response) ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: (No Response) Reviewer #2: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: (No Response) Reviewer #2: (No Response) ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No |
| Formally Accepted |
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PONE-D-19-20027R1 Recommendations in pre-registrations and internal review board proposals promote formal power analyses but do not increase sample size Dear Dr. Bakker: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Mariagrazia Benassi Academic Editor PLOS ONE |
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