Peer Review History
| Original SubmissionJuly 24, 2019 |
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PONE-D-19-20875 HIV testing, care and viral suppression among men who have sex with men and transgender individuals in Johannesburg, South Africa PLOS ONE Dear Dr Smith, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== I invite you to revise and resubmit your manuscript. Please attend to the reviewer's comments, which I believe may help to better strengthen the contributions of this manuscript to the field and public health practice. In addition, please attend to the following issues I noted in my review of the manuscript:
join the reviewers in their enthusiasm for the data you present on an important, but understudied population; highlighting both areas where some successes have been achieved and areas in need of targeted intervention efforts. Please provide a point by point response to each reviewers' response, and indicate in the response how it was addressed. This will help to facilitate a more timely review. ============================== We would appreciate receiving your revised manuscript by Jan 13 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Laramie Smith, PhD Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 1. Please include a copy of the interview guide used in the study, in both the original language and English, as Supporting Information, or include a citation if it has been published previously. 2. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. We will update your Data Availability statement on your behalf to reflect the information you provide. 3. We note that you have included the phrase “data not shown” in your manuscript. Unfortunately, this does not meet our data sharing requirements. PLOS does not permit references to inaccessible data. We require that authors provide all relevant data within the paper, Supporting Information files, or in an acceptable, public repository. Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data. 4. One of the noted authors is a group or consortium TRANSFORM Study Group. In addition to naming the author group, please list the individual authors and affiliations within this group in the acknowledgments section of your manuscript. Please also indicate clearly a lead author for this group along with a contact email address. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This study uses RDS methodology to obtain a representative sample of MSM/TG in Johannesburg, in order to investigate: HIV prevalence, HIV testing behaviour in HIV negative individuals and viral suppression in HIV positive individuals. The study found a high prevalence of HIV, that the majority of negative MSM/TG had tested within the last 6 months, and poor viral suppression in PLHIV, although comparable to that of men in South Africa in general. This is an important study adding to the evidence base attempting to understand HIV in this key population which has been historically neglected in Sub-Saharan Africa. I believe the manuscript could be improved by addressing the following comments: 1) Why was a cut-off of 200 used for viral suppression? The cut-off in South African treatment guidelines at the time of the study, as well as National Department of Health programme monitoring, is 400. The other commonly used cut-off at this time (2017) was 1000 (PEPFAR routine reporting; 2017 South African national HIV prevalence, incidence, behaviour and communication survey). In the new guidelines, 50 will be used. It would be more comparable to the other evidence and applicable to the South African setting to use 400 as a cut-off instead. 2) In South Africa it is known that there is a large group of MSM who identify as straight (example Lane et al. High HIV Prevalence Among Men who have Sex with Men in Soweto South Africa: Results from the Soweto's Men's Study AIDS Behav (2011) 15:626–634). The RDS methodology does not appear to have penetrated into this group well (not unexpected). I think it is important to mention this in the discussion. 3) Although the viral suppression rates are similar to those of other men, the rate of viral suppression in men in South Africa is well below that of women. e.g. 2017 South African national HIV prevalence, incidence, behaviour and communication survey: viral suppression in men- 43%; viral suppression in women- 58%. Is it possible that the finding of similar viral suppression in MSM/TG is related to the fact that men in general experience such significant access barriers? 4) Reference 31: has this manuscript been accepted for publication yet? I do not believe it can be referenced as it stands. From the journal website: "Do not cite the following sources in the reference list: Unavailable and unpublished work, including manuscripts that have been submitted but not yet accepted (e.g., “unpublished work,” “data not shown”). Instead, include those data as supplementary material or deposit the data in a publicly available database." 5) There are a few minor editing comments: - line 103: please change "18 years plus" to "18 years or older" - Table 1, employment status, unemployed- there appears to be an error in the % column Reviewer #2: Review: HIV testing, care and viral suppression among men who have sex with men and transgender individuals in Johannesburg, South Africa A very well written paper of major interest in the field. The authors estimated a very high HIV prevalence among MSM/TG in Johannesburg, and half of those HIV-positive were virally unsuppressed. These findings indicate gaps in the HIV care cascade that represent missed opportunities to improve the health of HIV-positive MSM/TG and to prevent ongoing HIV transmission. I only have one major concern that requires the author’s revision before publication. The authors have conducted univariate and multivariate logistic regression to identify factors associated with HIV-testing in the previous 6 months amongst those HIV-negative; and to identify factors associated with viral suppression amongst those HIV-positive. While the authors have correctly interpreted the odds ratios (OR). In this population, these binary outcomes (HIV testing, access to care and viral suppression) are common (>10%), it is often more desirable to estimate a relative risk (RR) or prevalence ratio since there is an increasing differential between the RR and odds ratio with increasing prevalence rates, and there is a tendency for some to interpret ORs as if they are RRs. The authors can estimate the RR in Stata with a log-binomial regression model or should there be convergence issues, apply the Poisson regression model with a robust error variance. A major consideration in public health research is need to communicate study results to a wider non-statistical community i.e. the medical community, general public, and policy makers. Poisson regression with robust variance and log-binomial regression provide correct estimates and are a better alternative for the analysis of this kind of study design with binary outcomes than logistic regression, as the relative risk or prevalence ratio is more interpretable and easier to communicate than the odds ratio. Please see references below. 1. McNutt LA, Wu C, Xue X, Hafner JP. Estimating the Relative Risk in Cohort Studies and Clinical Trials of Common Outcomes. Am J Epidemiol 2003; 157(10):940-3. 2. Zou G. A Modified Poisson Regression Approach to Prospective Studies with Binary Data. Am J Epidemiol 2004; 159(7):702-6. 3. Sander Greenland , Model-based Estimation of Relative Risks and Other Epidemiologic Measures in Studies of Common Outcomes and in Case-Control Studies, American Journal of Epidemiology 2004;160:301-305 Simba Takuva, MBChB, MSc, DTM&H. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Simbarashe Takuva [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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HIV testing, care and viral suppression among men who have sex with men and transgender individuals in Johannesburg, South Africa PONE-D-19-20875R1 Dear Dr. Fearon, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Zixin Wang, PhD. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: (No Response) Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: (No Response) Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: (No Response) Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: (No Response) Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: I have no additional comments or edits to add. The authors have attended to all concerns in a satisfactory way. Thank you. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Simbarashe Takuva |
| Formally Accepted |
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PONE-D-19-20875R1 HIV testing, care and viral suppression among men who have sex with men and transgender individuals in Johannesburg, South Africa Dear Dr. Fearon: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Zixin Wang Academic Editor PLOS ONE |
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