Peer Review History
| Original SubmissionDecember 12, 2019 |
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Transfer Alert
This paper was transferred from another journal. As a result, its full editorial history (including decision letters, peer reviews and author responses) may not be present.
PONE-D-19-34504 Microfluidic droplet application for bacterial surveillance in fresh-cut produce wash waters PLOS ONE Dear Dr. Harmon, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: The editor would like to apologize to the authors for the long duration of the review process; it was due to the unavailability of multiple reviewers with expertise in the field which were approached and invited by the editor to handle the manuscript but could not accept the invitation. Review comments have been timely provided by only one invited reviewer and are attached in the present letter. Given the considerable delay already encountered, and in an effort to provide the authors with a timely decision, this manuscript proceeded to the next stage of the editorial process, based on the evaluation provided by one reviewer and the academic editor. Although the academic editor is not an expert in microfluidic applications, raised comments regarding the overall approach of the presented study from a food microbiology perspective, its scientific soundness as well as the writing quality of the manuscript are summarized below. According to the editor’s opinion, the manuscript should be thoroughly revised, mainly in terms of structure and presentation, before its publication in PLOS ONE is considered. In its current form, the manuscript is rather wordy and hard-to-follow at several points, making it hard for the reader to extract and focus on its most important and novel findings. - The “Introduction” section is very long for a research paper; only in review articles is justified for such section to be wordy and actually include subsections. Please reduce significantly the length of the introduction and revise its content so that excessive details are avoided and a focus is placed on the information providing the rationale for conducting this particular study. Some of the information currently present in the introduction would better fit in the “Discussion” section of the manuscript, with the latter, however, also being rather wordy and requiring significant revision. - L24: please revise to “ready-to-eat produce commodities” - L27: revise to “Salmonella enterica ser. Typhimurium” (since it is the first time the bacterial species is mentioned and its full name should be presented); upon first mentioning, you can directly use “S. Typhimurium” for the rest of the manuscript. Please make sure that genus and species are in italics, whereas serotype is capitalized and not in italics. - L31 and throughout the text of the manuscript: use “h” instead of “hours” - L34: please revise to “4-h incubation” - L40: correct to “…incubated for 4 h…” - L35-38: are these numbers referring to the relative fluorescence intensity? Please rephrase for clarification. - L53-55: please consider revising to “According to the Centers for Disease Control and Prevention (CDC), approximately 48 million cases of foodborne illness occur annually in the United States (US).” - L60-62: This information should not be accurate…non-typhoidal Salmonella enterica is the second leading cause of foodborne illness, and not specifically the serotype Typhimurium… - L74: correct to “…critical control points” - L163: revise to “…in produce (i.e. shredded lettuce) wash water acquired from…” - L201: correct to “It was anticipated that droplet integrity could be…” - L203: the title of Table 1 should be revised for syntax; Suggestion: “Generation time and observed lag time of the tested bacteria in different culture broth media (TSB, BPW and RV broth) at 37°C or 41.5°C (RV broth only), with an initial bacterial concentration of 103 CFU/ml.” - Also, what do you mean by “observed lag”? Why primary modelling wasn’t attempted so that an actual estimate of lag phase duration to be attained? - L208: please correct “medias” to media”; singular: medium vs. plural: media; similarly throughout the text of the manuscript. For instance in L354: correct to “a fluorescent medium” - L300: change to “spread on TSA plates” - L302: please correct to “effects…were not examined” - L328: a growth rate cannot be restricted…a growth rate can be reduced - L337: a broth medium (RV) cannot have a superior growth rate since a broth medium cannot grow…please be careful with the wording used throughout the manuscript. In this particular case, the appropriate wording would be something like “As demonstrated by the collected data, a more prolific bacterial growth was supported during incubation in RV broth at 37°C as compared to 41.5°C” - L399-400: S. Typhimurium is a serotype, not a strain… - 580: Do not capitalize in table titles - L585: please provide all pertinent information for the automated turbidimetric system Bioscreen C, namely model, manufacturer, city, country. Act similarly for all materials and equipment described in the manuscript. - L587: correct “growing temperature” to “growth temperature”; similarly wherever else applicable throughout the text of the manuscript. ============================== We would appreciate receiving your revised manuscript by Apr 04 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Alexandra Lianou, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. We note that you have included the phrase “data not shown” in your manuscript. Unfortunately, this does not meet our data sharing requirements. PLOS does not permit references to inaccessible data. We require that authors provide all relevant data within the paper, Supporting Information files, or in an acceptable, public repository. Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data. 3. Please ensure that you refer to Figure 9 in your text as, if accepted, production will need this reference to link the reader to the figure. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript titled “Microfluidic droplet application for bacterial surveillance in fresh-cut produce wash waters” reports a series of experiments aimed at optimizing the use of droplets for selective screening of Salmonella typhimurium bacteria from wash waters used in industrial food processing. While microfluidic bacterial detection platforms are not particularly novel, this paper is nevertheless a worthwhile demonstration of the technology being used for analyzing field samples, which in this case comes from fresh-cut produce wash water. In terms of the background and motivation, the manuscript is convincingly written to convey the relevance of the reported work for public health and the utility of emergent droplet microfluidic technologies for this purpose. Moving forward to the results and discussion section, the logical flow of the experiments performed is sound, culminating in a culture-based setup capable of rapid and accurate detection for S. typhimurium. The technical advances from the reported work include rapid detection time (i.e. < 5 hours) and high selectivity in both isolating and visualizing S. typhimurium versus non-S. typhimurium species from field sampled water. Nevertheless, there are some lapses of clarity that require attention. In the paragraph beginning in line 208, it is unclear if the ‘intensity of fluorescence’ in line 210 refers to media auto-fluorescence or the fluorescence intensity arising from FITC-labelled antibodies in solution. Moreover, the lack of an illustration or schematic in the results section leaves readers guessing how the droplets that encapsulate bacterial cells are produced in the first place. It would be more helpful to move the workflow diagram in Figure 9 from line 685 in the Materials and Methods section to line 208 in the Results section since all subsequent results are derived from the production of these droplets. Once these concerns have been addressed, I give my approval for this manuscript to be published on this journal as it is an illustrative case study in the area of droplet microfluidic bacterial detection technology. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Microfluidic droplet application for bacterial surveillance in fresh-cut produce wash waters PONE-D-19-34504R1 Dear Dr. Harmon, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Alexandra Lianou, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): The comments raised during the review of the original submission have been adequately and sufficiently addressed by the authors. No further comments are raised. Reviewers' comments: |
| Formally Accepted |
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PONE-D-19-34504R1 Microfluidic droplet application for bacterial surveillance in fresh-cut produce wash waters Dear Dr. Harmon: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Alexandra Lianou Academic Editor PLOS ONE |
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