Peer Review History
| Original SubmissionAugust 14, 2019 |
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PONE-D-19-20564 Solving Text Clustering Problem using a Memetic Differential Evolution Algorithm PLOS ONE Dear Mr. Mustafa, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The reviewers think that your article has some merits but needs to address their comments and suggestions in order to improve the quality of the article. We would appreciate receiving your revised manuscript by Nov 09 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Mohd Nadhir Ab Wahab, Ph.D. Academic Editor PLOS ONE Journal Requirements: 1. When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. Additional Editor Comments: The reviewers think that your article has some merits but needs to address their comments and suggestions in order to improve the quality of the article. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The introduction provides a good, generalized background of the topic that quickly gives the reader an appreciation of the wide range of applications for this technology. I think the motivations for this study need to be made clearer.Figures must be in a good quality with high resolution.The manuscript is poorly written. It is full of incomplete & meaningless sentences. I really find it difficult to understand the manuscript. Authors really need to improve their written communications skills in English. All references must be revised. Issue numbers and volume numbers are missed from most of references. Conclusions should address whether or not they achieved the objective of the study. Reviewer #2: I congratulate the author on their work, however there seem to be multiple issues that need to be addressed before publication: (1) First and foremost, there are multiple grammatical and editorial errors in the text. As a non-native English speaker I can understand the text, but a larger audience will have a problem with that. Also it speaks of lack of attention: For example in the introduction section, one to the last paragraph is an incomplete sentence/paragraph "The reseach [25] of we propose a memetic differential evolution algorithm to address the text clustering (TC). The offered" (2) There seem to be unnecessary amount of citations to the works performed by one other group. Namely, citations 47,10,11 and then 12 and 13 (where most of these work seem to be highly connected to each other). In order to preserve the integrity of the journal and academic community, I suggest being more selective in your citations. (3) A disturbing amount of abbreviations and unnecessary nomenclature has been used that is not conductive to the cohesion of the report. For example FA (firefly algorithm) has been used two or three times in the entire document, I would suggest using the complete name "firefly algorithm" rather than FA, in order to not to confuse the reader. Or two different abbreviations TC and TD are used for text clustering and text document clustering. I suspected there is a difference between the two but I couldn't find any distinction between these two, neither in the manuscript, nor online. If these two refer to the same concept, you can use only one of them, if not, you will need to do a better job defining the two in the manuscript. (4) In the section "population initialization phase" the authors refer to equation (4) for computing cluster centroids. I believe they intended to refer to equation (6). (5) The authors are using F-value or F-measure as their evaluation metric, I think it is a good practice to include the metric definition in the manuscript. Moreover, when referring to this metric they cite a 2017 paper. You can say that the cited paper has used F-value as a measure of clustering efficiency and therefore it is sound to use F-value, but the way it is put in the manuscript, it implies that the 2017 paper was the “invention” of the F-value which clearly is wrong. (6) In the section "Parameter setting used in the study": how did the authors come to this setting? Did they perform a parameter study? Or maybe cross-validation? (7) Number of terms in documents (table 1) seem to be very low. For example 1700 unique words in a dataset of 299 documents (CSTR dataset). Or 3000 words in 900 documents. Maybe this numbers are after stemming and stop-word removal, but how are those steps performed? I would recommend, if not within the main manuscript, at least provide a supplementary material section where you describe this detailed methodology. As an example refer to table1 in the following paper: https://doi.org/10.1109/ACCESS.2019.2923462 Their datasets seem to have much higher term/document ratio, is there a reason for this? Maybe your datasets are more technical than of general nature? in this case your algorithm will be for "technical text classification" (8) The authors are using tf-idf and vector space model for their document representation. Why not using a more elaborate word-representation such as Word2Vec or GloVe. Is there a benefit in using tf-idf and not more modern representations? Needs to be explained. I applaud the authors for their efforts but I think the points made above are the minimum that need to be met to before being published in a journal. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-19-20564R1 Solving Text Clustering Problem using a Memetic Differential Evolution Algorithm PLOS ONE Dear Mr. Mustafa, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please address all the comments given by the reviewers. One of the reviewer raise their concern where the similarity between this paper with other published paper entitle "An improved adaptive memetic differential evolution optimization algorithms for data clustering problems" under PLoS One as well. Please emphasize on the different between these two papers and highlight your contribution explicitly. We would appreciate receiving your revised manuscript by Apr 03 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Mohd Nadhir Ab Wahab, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (if provided): Please address all the comments given by the reviewers. One of the reviewer raise their concern where the similarity between this paper with other published paper entitle "An improved adaptive memetic differential evolution optimization algorithms for data clustering problems" under PLoS One as well. Please emphasize on the different between these two papers and highlight your contribution explicitly. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #3: All comments have been addressed Reviewer #4: (No Response) Reviewer #5: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #3: Yes Reviewer #4: Yes Reviewer #5: No ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #3: Yes Reviewer #4: Yes Reviewer #5: No ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #3: Yes Reviewer #4: Yes Reviewer #5: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #3: Yes Reviewer #4: Yes Reviewer #5: No ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #3: The authors have addressed the comments from previous reviewers and improved the manuscript. I suggest all abbreviations of algorithms such as KH, CS, PSO, etc. be removed, they are not necessary and still excessive, making the manuscript hard to follow. The abstract needs to be improved as well. Reviewer #4: The authors have met all comments of the previous reviewers. The English could still be improved, though. Reviewer #5: 1. Line 390: in the comparative analysis section: Why is the work from Ref 23 not included here? What is the difference between this work and the work presented in Ref 23? 2. Line 340: The use of F-measure sounds good, but it is logical to present the full spectrum of evaluation metrics before narrowing down to one. For instance, the reader would be interested to know the AUC, in addition to the F-measure. 3. Line 233 to 235: The study failed to explained the limitation of existing algorithm. The use of overly broad terminology does not account for the limitation. Furthermore, the study failed to state the limitation of MA and DE for which an extended is considered important. I think this are missing steps that can improve the paper. 4. Reference to the Related works: The language is really bad. Another round of proof reading would be required. One more thing, the sequence of the reference can be adjusted in ascending order. It is presented in a scattered manner. this does not aid reading. Overall, the manuscript failed in readability due to poor grammar and sentence structure. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #3: Yes: Jijun Tang Reviewer #4: Yes: Volker Ahlers Reviewer #5: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Solving Text Clustering Problem using a Memetic Differential Evolution Algorithm PONE-D-19-20564R2 Dear Dr. Mustafa, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Mohd Nadhir Ab Wahab, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Congratulations. Please proof read the article as well. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #3: All comments have been addressed Reviewer #4: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #3: Yes Reviewer #4: (No Response) ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #3: Yes Reviewer #4: (No Response) ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #3: Yes Reviewer #4: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #3: Yes Reviewer #4: (No Response) ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #3: The authors have adequately addressed all my concerns, I have no further request. for other updates. Reviewer #4: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #3: Yes: Jijun Tang Reviewer #4: Yes: Volker Ahlers |
| Formally Accepted |
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PONE-D-19-20564R2 Solving Text Clustering Problem using a Memetic Differential Evolution Algorithm Dear Dr. Mustafa: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Mohd Nadhir Ab Wahab Academic Editor PLOS ONE |
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