Peer Review History
| Original SubmissionJuly 18, 2019 |
|---|
|
PONE-D-19-20048 (-)-α-Pinene reduces quorum sensing and Campylobacter jejuni colonization in broiler chickens PLOS ONE Dear Dr. Smole Možina, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. As is often the case, the two reviewers have highlighted different points in their reviews. I would urge the authors to read these comments carefully for any revision they make, as there are quite a few of them. However, in terms of what needs to be addressed, the following four points can be made: 1) Methodological issues - sampling as swabs, but reporting data as if it were faeces, and concerns over the impact of outlier data in the conclusions drawn 2) Repetition of methods and results - both reviewers comment on this 3) Justification for issues around the study design - relevance of the study to humans in terms of drug use in humans and chickens 4) Discussion - some clarification over aspects in regards to framing the results in the current literature We would appreciate receiving your revised manuscript by Nov 30 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Patrick Jon Biggs, PhD Academic Editor PLOS ONE Journal Requirements: 1. When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. In your Methods section, please provide additional details regarding the animals used in your study and ensure you have described the source. For more information regarding PLOS' policy on materials sharing and reporting, see https://journals.plos.org/plosone/s/materials-and-software-sharing#loc-sharing-materials. 3. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This paper presents valuable and to a large extent confirmatory findings on the effect of the essential oil component (-)-α-pinene against the most important foodborne pathogen Campylobacter jejuni. The effect of this component on the pathogen was demonstrated on different levels: in vitro through antimicrobial activity, antibiotic resistance modulation, and quorum sensing inhibition; in vivo through a chicken infection model. The paper is largely based on a previous study of the same research groups (Kovac et al. 2015) in which both the antimicrobial activity and the resistance modulatory activities of (-)-α-pinene in C. jejuni against two fluoroquinolones was investigated. In the present paper, the C. jejuni strain collection was extended to confirm these activities, but surprisingly the strain (NCTC 11168) used for inoculation of the chickens was not included. In addition, now also the inhibition of quorum sensing was shown in a Vibrio harveyi model. Based on these observations, a broiler chicken infection model was used to see if (-)-α-pinene added in the drinking water would reduce the C. jejuni load in the gut. In contract to the in vitro results, no resistance modulatory effect was seen in the chickens, but where are the in vitro data which proof this effect for the inoculation strain ? No effect, either (-)-α-pinene alone or in combination with enrofloxacin, was seen on the colonization level. Only through a direct gavage of (-)-α-pinene, a statistically significant but very modest reduction (< 1 log cfu/g feces) was observed for the ciprofloxacin sensitive C. jejuni population only. In fact, for half of the chickens infected with this sensitive C. jejuni population, the C. jejuni excretion level was comparable with the untreated control. The statistical significance was probably only obtained through one bird showing a considerable lower C. jejuni level. I therefore doubt about the soundness of the statistical analysis using a t-test and the inclusion of the outlier bird. Although the different categories of results are valuable on their own, there is a general lack of coherence between the results. The quorum sensing results have almost no connection with the other types of data and as they are only observed in vitro, there is no indication that this activity will also appear in vivo and therefore would help to find the mechanism of the observed C. jejuni colonization decrease with (-)-α-pinene direct gavage. The rationale to look for a synergy between (-)-α-pinene and enrofloxacin in broiler chickens is not clear. Enrofloxacin is used in human medicine, but is not used in broilers to prevent or combat a C. jejuni infection. The observation of the enrofloxacin/ciprofloxacin resistance modulation by (-)-α-pinene in vitro is interesting and could have practical considerations for human clinical use, but I doubt about the practical relevance in poultry rearing. The introduction is written too general about the control of C. jejuni in poultry and the increasing risk of AMR in this pathogen. As a result, the real focus of this paper which is the effect of (-)-α-pinene on C. jejuni is not well introduced. For example, quorum sensing which is one of the focus points, is only introduced with a small paragraph of 5 lines, but mentioning only one reference related to C. jejuni in a guinea pig abortion model which is not really relevant for poultry. The discussion is written too much as a review of literature on the effect of other essential oils or plant components on pathogens and on the importance of improving the control of C. jejuni in poultry in general. It’s not enough focused on the explanation and discussion of the own results. For example, there is no hypothesis why (-)-α-pinene has no effect on the ciprofloxacin resistant C. jejuni population in the broiler infection model. There are still some corrections in English to be made, this should be checked throughout the manuscript. Other specific remarks: -L145: for what purpose was the NCTC 11168 luxS mutant used? As negative control? -L156: explain AB -L160: is the negative control correct here (V. harveyi suspension)? -L166 & 172: incorrect numbering of figures (Fig. S2 before S1) -L175-176: there can’t be two negative controls, the 11168 luxS mutant and fresh MHB? -L191: explain MHA-SS; details for cloacal swabs. Campylobacter status of chickens was only checked by direct plating, not by enrichment? What was the detection limit? -L218: plated and incubated -L258, table 1: host origin of the strains can be shown here -L275: strains vs. isolates -L280: also strain W14861 has this behavior -L311-312: I don’t understand how the results are presented here versus the negative control (luxS mutant) -L324-328: this is a repetition from M&M -L341: where are the horizontal lines in the figure? -L346: in Fig. 2, I only see 3 colonized birds -L349: idem, only 7 colonized birds? -L366: what is the exact meaning of “the potential to lower…”, this is scientifically not well formulated; is it statistically significant or only a trend? -L373-385: this is a repetition from M&M -L439: macrolides were not included here Reviewer #2: The subject of the work is interesting and innovative. It raises an important issue regarding the search for alternative methods to combat Campylobacter in poultry. It would also be worth checking (maby in next stage of research) what effect the (-)-a-pinene has on other microorganisms inhabiting the intestines in birds. Does it not inhibit the growth and colonization of beneficial microflora such as lactobacilli or bifidocabterie? I have some reservations about the methodology of the experiment regarding the assessment of the influence of a-pinene on the colonization of Camylobacter in chicks. The authors took cloacal swabs, diluted in MHB and plated on agar; the result is given in cfu/g feces. How did the authors weigh droppings when they took a swab? The authors also tend to repeat in the Results chapter information from the Materials and Methods chapter, e.g. P17L324-328; P19L373-377. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
(-)-α-Pinene reduces quorum sensing and Campylobacter jejuni colonization in broiler chickens PONE-D-19-20048R1 Dear Dr. Smole Možina, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Patrick Jon Biggs, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #3: I reviewed the R1 as well as the responses from the authors to the former reviewers. I think the authors did a good job to address these questions. I do not have any further concern. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Marc Heyndrickx Reviewer #3: Yes: Xiaonan Lu |
| Formally Accepted |
|
PONE-D-19-20048R1 (-)-α-Pinene reduces quorum sensing and Campylobacter jejuni colonization in broiler chickens Dear Dr. Smole Možina: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Assoc Prof Patrick Jon Biggs Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .