Peer Review History
Original SubmissionSeptember 7, 2019 |
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PONE-D-19-25209 Changes in airway dimensions and mucus plugs in patients with asthma exacerbation PLOS ONE Dear Dr Takaku, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The Reviewers have pointed to a number of issues that should be amended prior to resubmission. We would appreciate receiving your revised manuscript by Dec 14 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Josué Sznitman Academic Editor PLOS ONE Journal Requirements: 1. When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. We noticed you have some minor occurrence(s) of overlapping text with the following previous publication(s), which needs to be addressed: https://doi.org/10.1111/j.1440-1843.2011.02052.x doi: 10.1097/LBR.0000000000000020 In your revision ensure you cite all your sources (including your own works), and quote or rephrase any duplicated text outside the Methods section. Further consideration is dependent on these concerns being addressed. 3. Please include in your Methods section the date ranges over which you recruited participants to this study. 4. Please amend either the title on the online submission form (via Edit Submission) or the title in the manuscript so that they are identical. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No Reviewer #3: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: No Reviewer #3: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In this paper, Yoshida et al. investigated the utility of using Chest CT scans to evaluate airway diameter and mucus plugs in a small cohort of patients with asthma both during and after an exacerbation. This paper builds on growing evidence from several groups that CT scans provide useful information in quantifying asthma severity, and can possibly provide a new dimension of asthma heterogeneity (e.g. the CT-derived “mucus score”, recently reported by Dunican et al.). Yoshida et al. studied 13 asthmatics one hour after initial presentation for an asthma exacerbation, as long as they were able to lie flat and sustain a breath hold during CT imaging. Asthma diameter was quantified using curved multiplanar reconstruction software, and mucus plugs were identified as areas of airway opacification. The main findings were that multiple airways were narrower and more occluded during an exacerbation, as compared to steady state. Although these findings are predictable and not surprising in and of themselves, they add further support to the idea that CT scans can be useful adjuncts to other measures of asthma severity. The paper is succinctly written with clear figures and results. The manuscript would benefit from careful proofreading and correction for English grammar (starting with the introductory sentence of the Background). A few additions and modifications would strengthen the impact of the paper. 1) Please provide the length of time between the exacerbation phase and the recovery phase CT scans. 2) Please explain how their quantification of airway occlusion from mucus plugs distinguished between opacified airways, adjacent blood vessels, or possibly airway collapse. 3) How does their method of counting mucus plugs compare or contrast with the “mucus score” reported by Dunican et al (reference 11)? 4) Please provide more information about the subjects studied, including: (i) medication use, (ii) timing of lung function tests relative to CT imaging, (iii) other lung function data (e.g. RV/TLC ratio or bronchodilator reversibilty), and (iv) any data on blood eosinophils or FeNO? 5) It would be more informative to represent the data using individual data points as well as averages, and not just summary bar graphs. 6) Was there any correlation between their CT indices of airway narrowing, or mucus plugs, with lung function measurements, or severity of the asthma exacerbation? Reviewer #2: Yoshida et al. present a study of airway obstruction measured by two different indices on CT, in patients with asthma at time of exacerbation and at stable follow-up. The first main finding of the paper is that internal diameters (Din) of the 2nd to 6th generation airways are smaller during asthma exacerbation than at follow-up and that these differences are greater in progressively smaller airways up to the 5th generation. The second main finding of the paper is that mucus plugs were more frequent on CT scan up to the 5th generation in patients during asthma exacerbation than at follow-up . The authors conclude that the greatest obstruction at time of exacerbation was seen in the 4-5th generations and that this obstruction was seen in both decreased Din (from smooth muscle bronchoconstriction?, though authors do not state this directly) and increased mucus plugging. There is a lack of published data in the literature comparing patients longitudinally during exacerbation and at stability, which this paper goes some way to address, though in small numbers. Major comments By way of background in the abstract, the authors state that “decreased airway diameter and increased mucus plugs … influence the effectiveness of inhaled drugs”. The reviewer is not aware of data supporting this statement. In the introduction, the authors present a good unbiased review of the literature in this area. At the conclusion of the introduction, the authors refer to “the pitfall of inhalation therapy at asthma exacerbation” which needs to be supported by a reference. The conclusion in the abstract accurately reflect and do not overstate the findings of the paper and do not In the methodology, the authors describe an automated airway tree segmentation using a spanning tree algorithm. I think this needs to be more descriptive. Is this fully automated or is there any manual component to the measurement as there is with many segmenting algorithms? Are the mucus plug measured or counted manually on the segmented CT scans? Counting is alluded to in a figure legend but not in the methods text. How are the same airways/plugs compared longitudinally across scans? How did the authors handle multiple mucus plugs in the same segment? A more detailed description in the on the algorithm for generating the CT measurements and mucus measurements would be welcome in the main text or supplementary data. In the statistics section there is no reference to adjusting for any confounding variables. In the results, the authors claim that the decrease in Din and presence of mucus plugs contribute to airway obstruction during an asthma exacerbation but, although pulmonary function was described in the methods, no PFT data is reported in the results. This is likely because it is not standard practice to perform PFT;s during exacerbation, but it would be nice to show a correlation between FEV1 or FEV1/FVC and 4-5th airway obstruction by DIN, by plugs and by a combination of both. In this way, the authors claim that these CT findings are particularly important for airway obstruction would be supported by the data. There is not data in this study to support the hypothesis that the changes in Din and mucus plugs are influencing the pharmacodynamics of inhalation therapy. In the discussion, the authors report that mucus plugs were less frequently observed in the more distal airways but this is not reflected in their data. The authors discuss the possible role of surfactant in the aetiology of mucus plugging in the small airway but most airways analysed in this study were not considered small airways (<2 mm). Minor comments: The text would benefit from review by a native English speaker. In general, it was well written and there were only a few places in the text where minor changes should be made to the language. Please clarify what is meant by “The exacerbation severity … classified according to GINA guideline”. Authors should clarify whether they mean severity based on symptoms, peak flow, vital signs on presentation etc. Number of patients recruited should be reported at the beginning of the results section. A consort diagram showing the number of patients screened, excluded, did not consent etc., could be included. Asthma control is referred to in the results (well- or partially-controlled) but not defined in the methods. How was bronchiectasis measured? It is referred to in the results but not the methods. The authors overstate the importance of these finding in suggesting that patients should be made aware that the limited effectiveness of their inhalers during an acute exacerbation and that they should use a systemic corticosteroid instead. This goes agains current guidelines and is not a message we would want to emphasise at this stage. Rewording should be considered. Reviewer #3: The manuscript titled “Changes in Airway Diameter and Mucus Plugs in Patients with Asthma Exacerbation” by Yoshida et al. is focused on identifying airway diameter changes and presence of mucus plugs immediately following an asthma exacerbation. To do this, the authors followed a small cohort of stable and unstable asthmatics. High resolution CT (HRCT) images were acquired at baseline and one-hour following the exacerbation. In addition, spirometry tests were collected at baseline. While the study is unique, mainly because of the imaging performed immediately following an exacerbation, there are a few points that should be addressed prior to publication: My main concern lies in the identification of mucus plugs during the exacerbation phase. How are mucus plus distinguished from airway closure due to hyper-constricted airways? Specifically, why would there be more mucus plugs during an exacerbation than during the stable phase? Why were the PFTs taking two weeks after the HRCT scans were acquired during the stable phase? Should they have been collected at the same time? Were PFTs attempted during or immediately following the exacerbation? The sentence on line 193 is confusing: “This study clearly showed that small airway shifted toward proximal at asthma exacerbation.” Is this because the small airways are solely defined based on their diameter and the diameters become smaller because of airway constriction? Should classification of which airways are considered small should be done at baseline to allow for direct comparison? The CT scans were collected at the end of inspiration – which I assume is FRC + TV? Were the lung volumes verified? Specifically, did the authors verify that the images were acquired at the same lung volume during both the baseline and exacerbation scans? While the manuscript is clear, and it is easy to understand the data collection and interpretation of the results, I believe that the manuscript could benefit from a careful grammar analysis. For example, the first sentence of the abstract should read something like: “Airway obstruction, due to decreased airway diameters and an increased incidence of mucus plugs, are two structural variables that influences the effectiveness of inhaled drugs during an asthma exacerbation.” ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
Revision 1 |
Changes in airway diameter and mucus plugs in patients with asthma exacerbation PONE-D-19-25209R1 Dear Dr. Takaku, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Josué Sznitman Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #3: No ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors adequately addressed all of the comments raised during the initial review. The inclusion of individual data points and new data about patients strengthens the impact of the manuscript. Reviewer #3: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #3: Yes: Jessica M Oakes |
Formally Accepted |
PONE-D-19-25209R1 Changes in airway diameter and mucus plugs in patients with asthma exacerbation Dear Dr. Takaku: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Prof. Josué Sznitman Academic Editor PLOS ONE |
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