Peer Review History
| Original SubmissionNovember 15, 2019 |
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PONE-D-19-31818 Genetic parameters of growth and adaptive traits in aspen (Populus tremuloides): implications for tree breeding in a warming world PLOS ONE Dear Dr DING, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Besides meeting the complementary and constructive comments raised by two reviewers, I suggest a bit of effort is put into clarity of tables and figures. I would appreciate it if both origin and planting sites were detailed especially in table 1. It also puzzles me that there is an experimental set up with replicates, but number of replicates (clones) not indicated ... could that number potentially be 1629/6 - or would it be more correct to write 1620 in that column? Fig 2 presents two phenology traits and one growth trait for the northern garden? whereas figure 3 only presents growth traits for the southern garden. Would it make sense to present only phenology responses in figure 2 and then the two height responses (for the southern and northern origin, I believe) could perhaps be collected in the same figure 3?. We would appreciate receiving your revised manuscript by Jan 30 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
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If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. The following resources for replacing copyrighted map figures may be helpful: USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/ The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/ Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/ Landsat: http://landsat.visibleearth.nasa.gov/ USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/# Natural Earth (public domain): http://www.naturalearthdata.com/ [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: To Authors, The study by Ding et al., (PONE-19-31818) evaluated ten progeny trails of P. tremultoides in western Alberta, Canada. In doing so, the authors collected survival, height, DHB, leaf abscission data from a subset of test sites planted into southern and northern breeding zones. Overall, the study used roughly 30000 tress to arrive at the conclusions – i.e., growing season is more important for survival and growth than avoiding spring & fall frost. Line29: Insert “Canada” after Alberta. This helps the readers. Line31: provide a relevant reference to support aspen short rotation forestry. Line 35-36: rewrite the sentence – “Selection and breeding…….” Line 42: change (9) to [9] and fix it throughout the text. Line 105: replace “gallon” to standard reporting units. Line 106: provide geographic coordinates of Drayton Valley (latitude, longitude, elevation). Line 109: provide geographic coordinates of Fairview (latitude, longitude, elevation). Line 142: replace day of year with “day-of-year” throughout the text. Line 239: Under Results section….please expand Table 1 to cover survival, bud break and leaf abscission. Line 262: Expand the results from Table 3. Line 265: please reconfirm the correlation values to match with Table 4. Q1. Can authors also address the role of “latitude of origin” on plant height, leaf abscission and breeding value? This would permit to test if photoperiodic adaptation has a role or not. Line 281: Be specific with fall phenology. L283-291: I would like to authors to consider moving Fig 2 and Fig 3 description to “Results’ section rather bringing it up under “Discussion” section. Line 301: Provide relevant reference/s to support your argument. Line 312: Be specific about leaf abscission and leaf senescence. These are two independent phenological events. Line 325: Fix typo – trumula to tremula. Line 337-338: Please confirm the age for growth selection for different sites. Table 1: Provide units for Lat, Lon, Ele. Also, confirm if its leaf coloration or leaf abscission. Make the changes in Table heading as well. Table 2: Provide units for height and DBH. Reviewer #2: This is a well-circumscribed and generally well-written manuscript based on an extensive dataset. The results are interesting but not unexpected. The data do support the main conclusion, that current aspen populations are adapted to colder climates and now lag behind climate warming; but this too must be expected given its lifespan. I do think it’s worthy of publication if the venue is appropriate. A general problem I have with the discussion is encapsulated by the comment on line 299 that seems to equate growth cessation with leaf abscission, or at least suggests that they are both in the fall. Height growth cessation generally occurs in summer, several weeks before leaf color change even begins. In Populus it takes about 4 weeks for buds to fully form after height growth cessation, then leaf abscission occurs after that. To be sure, there is generally a correlation (at least at the population/provenance level) between date of height growth cessation and date of leaf senescence, but there is greater spread in the former than in the latter. In black cottonwood and balsam poplar from western Canada, height growth cessation generally occurs in mid-July, with buds fully formed by mid-August, and leaf senescence happening in September. Aspen may be different, but probably not hugely so. The last paragraph seems anti-climactic and disconnected from the title (i.e., the “implications for breeding in a warmer world). Could there be a better ending? What is your take home message? Other minor points/corrections: L9 – insert “dates of” before “budbreak” L15 – Change to “These results suggest” or “This result suggests” L22 – delete comma after bracket L25-L26 – I suggest breaking this sentence up into two sentences (after “reproduction”). L42, and elsewhere – Why do you cite the names of the first two authors on multi-authored papers; i.e., why “St. Clair, Mock (9)” rather than “St. Clair et al. (9)”? Is this correct PLOS One format? L43 – insert “and” after clones L45 – change “Heterosis … were” to “Heterosis … was” L65 – delete hyphens in “within-populations” and “within-families” L71 – “increase” should be “increases” L90 – insert “the” before “two breeding regions” L93 – I suggest deleting “The first two” to start the sentence with “Trials…” L98 – delete “The” and start sentence with “Trials…” L106 – most readers will not know that Drayton Valley is in Alberta. Insert AB L116 – Change “number of half-sib, full-sib families and clones” to “numbers of half-sib and full-sib families, and clones” L151 – Language needs adjusting here. L178 – insert “the” after “into” L194 – language needs adjusting L211 – change “following” to “follows”? L283 – I don’t find this surprising. There are generally much larger differences between genotypes/populations for fall/summer phenological traits than for spring phenological traits (in terms of # of days), and the weather is often warmer. A greater effect on the length of the growing season (or photosynthesizing season) is expected, and therefore a greater impact on height and/or survival. L294 – Relative to positive correlations between productivity and senescence and/or height growth cessation, for Populus trichocarpa see reference 18. For aspen per se (Populus tremula), you might also find interesting a paper by Soolanayakanally et al. (2015. Frontiers in Plant Science 6:528). [Another thought: I suppose if you have date of budbreak and LAB, could you then take the difference between them as the length of the active photosynthetic period and also then check the correlation with growth? It might be a bit better.] L325 – “trumula” should be “tremula” L336 – Was there actual evidence of browse then? More clarity around this point would be useful. Tables – Throughout the manuscript you refer to the trials by number, not “trial code”. I suggest adding a column for trial number to Table 1 and then using those numbers instead of codes for Tables 2-4. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Raju Soolanayakanahally Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. 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| Revision 1 |
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Genetic parameters of growth and adaptive traits in aspen (Populus tremuloides): implications for tree breeding in a warming world PONE-D-19-31818R1 Dear Dr. DING, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Benedicte Riber Albrectsen Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-19-31818R1 Genetic parameters of growth and adaptive traits in aspen (<I>Populus tremuloides</I>): implications for tree breeding in a warming world Dear Dr. Ding: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Benedicte Riber Albrectsen Academic Editor PLOS ONE |
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