Peer Review History
| Original SubmissionNovember 3, 2019 |
|---|
|
PONE-D-19-30028 Using old antibiotics to treat ancient bacterium - β-lactams for Bacillus anthracis meningitis PLOS ONE Dear Dr. Levy, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Reviewers have provided input on your manuscript and have recommended a major revision be completed. I invite you to review the comments provided, and if willing to undertake the work recommended, to provide a revised manuscript and a point-by-point response to each comment raised by the reviewers. Additional experiments to address the issue of PA vaccination to increase BBB penetration (particularly using VollumΔTox instead of the Vollum strain to infect the animals following PA vaccination) should be completed as recommended by Reviewer #2. Furthermore, more explanation regarding which stage of disease is being modeled in the animal studies needs to be addressed, as recommended by Reviewer #1. Please also review the order of the figures as there appears to be an issue regarding the order/numbering of the figures and remove panels which duplicate presentation of data (e.g. present only the survival curves or the bar graphs) in Figures 1-5. We would appreciate receiving your revised manuscript by January 30, 2020. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Haroon Mohammad Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements:
[Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript submitted by Sittner et al. entitled “Using old antibiotics to treat ancient bacterium-B-lactams for bacillus anthracis meningitis” discusses several interesting findings that could be beneficial for better understanding B. anthracis pathogenesis and anthrax disease. However, there are several important aspects from this reviewer’s perspective that must be addressed prior to being suitable for publication. MAJOR POINTS 1. The discussion of any impacts of toxin components seems to be missing from the manuscript. The models being used here are interesting and are certainly useful, but more detailed description of how they reflect natural disease is warranted. For example, when introducing encapsulated bacteria into the ICM of the rabbits and then starting treatment 6 hours later, what stage of disease is being modeled here? If it is late stage disease, the lack of toxemia or damage associated with toxemia must at least be addressed as a potential shortfall of this model. As the authors are well aware, B. anthracis pathogenesis and subsequent anthrax disease is a highly complex scenario involving spores, bacilli, and toxins, thus more effort should be focused on placing this useful model in context of natural disease. 2. It is unclear to this reviewer after reading this manuscript how vaccination with PA can compromise the BBB. Please make this point clearer and provide references or other rationale, I apologize if I missed this point. Additionally, similar to point #1 above, the authors should comment about how the PA vaccine also changes the pathogenesis of the disease in their rabbit models. The PA vaccine is potent and it would definitely impact the disease model. MINOR POINTS 1. Line 25, what evidence is being referred to suggest a rise for bio-terror risk associated with spores? I would recommend altering this, to reflect that B. anthracis spores are a proven risk. 2. Line 55, the authors should address the lethality associated with cases of GI anthrax, as it can cause more than “gut inflammation”. 3. Although a common acronym, please define BBB first time used in manuscript (sorry if I missed it). 4. Line 142, “rabbit” should be “rabbits” 5. The figures seem to be out of order? 6. The data presentation is duplicative, there is no benefit in presenting the data as bar graphs and as survival curves. Remove the bar graphs. Reviewer #2: The data provided in this manuscript generally support your conclusion that the old antibiotics can be used to treat anthracis meningitis efficiently. Below please see the comments. 1. In your manuscript, the numbering of Figures 2, 4 and 5 is wrong. They should be corrected. 2. Augment and Unasyn but not Tazocin were inefficient to protect ICM infected animals in your study. You explained that this was due to low activity of Piperacillin. You should provide the MIC data for the antibiotics (Amoxicillin, Ampicillin, Piperacillin and Meropenem) used in your study. 3. You used PA vaccination to increase BBB penetration. Your previous study (Treating Anthrax-Induced Meningitis in Rabbits. Antimicrobial Agents and Chemotherapy, 2018) showed that the presence of anthrax toxin promotes animal death (compare the survival time of animals infected with Vollum vs. VollumΔTox), which may be partially reversed by anti-PA antibody induced by PA vaccination. You cannot exclude the possibility that the increased survival of animals receiving Ampicillin 150 + Vacc (Fig. 5 in your submission) is due to toxin neutralization. To better address that increased BBB penetration can increase the efficacy of Ampicillin, VollumΔTox instead of Vollum strain should be used to infect the animals following PA vaccination. Please address this concern by experiments and/or discussion. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
PONE-D-19-30028R1 Using old antibiotics to treat ancient bacterium - β-lactams for Bacillus anthracis meningitis PLOS ONE Dear Dr. Levy, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== Thank you for addressing the reviewers comments. After carefully reviewing your revised manuscript, I am requesting that the figures be modified to address a concern previously raised by both reviewers. Figures 1 - 5 should only be presented as survival curves (e.g. please remove all of the bar graphs). Additionally, for the supplementary figure, please correct the title by changing "adminiatration so" to "administration of" and include a brief explanation of the pharmacokinetic data for meropenem in the main manuscript text. ============================== We would appreciate receiving your revised manuscript by January 27, 2020. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Haroon Mohammad Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Thank you for making the requested edits and additions. However, I still feel strongly that by presenting the exact same data in 2 different graph formats, it causes confusion and over states the amount of data presented. Between a line graph and the text the data should be able to be presented in a manner that all readers can understand. Please streamline the data presentation is only represented in one format and the text. Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
|
PONE-D-19-30028R2 Using old antibiotics to treat ancient bacterium - β-lactams for Bacillus anthracis meningitis PLOS ONE Dear Dr. Levy, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We would appreciate receiving your revised manuscript by January 28, 2020. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Haroon Mohammad Academic Editor PLOS ONE Additional Editor Comments (if provided): Dear Dr. Levy, Thank you for responding to the reviewer's request to modify the figures by removing the bar graphs. While reviewing the revised manuscript, I noticed that the figure legends for Figures 1-5 still mention "Survival percentage (bars) and time to death (Kaplan-Mayer curves) are shown." I would appreciate if you can correct all figure legends to remove the statement regarding survival percentage (bars) being shown (as this was deleted in the revised manuscript figures). [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 3 |
|
Using old antibiotics to treat ancient bacterium - β-lactams for Bacillus anthracis meningitis PONE-D-19-30028R3 Dear Dr. Levy, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Haroon Mohammad Academic Editor PLOS ONE |
| Formally Accepted |
|
PONE-D-19-30028R3 Using old antibiotics to treat ancient bacterium - β-lactams for Bacillus anthracis meningitis Dear Dr. Levy: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Haroon Mohammad Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .