Peer Review History
| Original SubmissionSeptember 17, 2019 |
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PONE-D-19-26156 Simultaneous quantification of palbociclib, ribociclib and letrozole in human plasma by a new LC-MS/MS method for clinical application PLOS ONE Dear Dr. Posocco, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please respond to all of the reviewer queries and provide all of the details for the method and the results that they have requested. I have assigned this manuscript as minor revision, because no additional experiments appear to be necessary, but you will need to fully address the concerns raised by the reviewers. As noted by one reviewer, it is helpful to the readers to have the manuscript evaluated by a colleague or editorial service for English grammar and usage, particularly as PLoS ONE does not edit manuscripts in this way prior to publication. We would appreciate receiving your revised manuscript by Dec 21 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, John Matthew Koomen, PhD Academic Editor PLOS ONE Journal Requirements: 1. When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. Please provide the product and lot numbers (if provided) of the palbociclib provided by Toronto Research Chemicals and Ribociclib and Letrozole provided by Merck-Sigma Aldrich. 3. In your Methods section, please provide additional information about the participant recruitment method and the demographic details of your participants. Please ensure you have provided sufficient details to replicate the analyses such as: a) a description of how participants were recruited, and b) descriptions of where participants were recruited and where the research took place. 4. Thank you for stating the following in the Competing Interests section: I have read the journal's policy and the authors of this manuscript have the following competing interests: Dr. Fabio Puglisi reports grants from Astrazeneca and from Roche, outside the submitted work. Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared. Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf. Please know it is PLOS ONE policy for corresponding authors to declare, on behalf of all authors, all potential competing interests for the purposes of transparency. PLOS defines a competing interest as anything that interferes with, or could reasonably be perceived as interfering with, the full and objective presentation, peer review, editorial decision-making, or publication of research or non-research articles submitted to one of the journals. Competing interests can be financial or non-financial, professional, or personal. Competing interests can arise in relationship to an organization or another person. Please follow this link to our website for more details on competing interests: http://journals.plos.org/plosone/s/competing-interests [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors present a quantitative LC/MS/MS method for the analysis of cyclin dependent 22 kinase inhibitors (CDKIs) palbociclib and ribociclib and the aromatase inhibitor letrozole in human plasma. The indicated assay has potential clinical utility with a short run time of 6.5 minutes and an analytical range that may support therapeutic drug monitoring for cancer patients receiving these drugs. The authors in future might consider reducing the calibration range to avoid carryover problems and then dilute anticipated higher concentration patient specimens into this range. Reducing the calibration range may lead to the use of linear regression vs the indicated quadratic regression. Parameters such as recovery, precision, accuracy, incurred sample reanalysis were adequately presented by the authors as per FDA and EMA guidance. Points of concern are described below. Major issues: 1) Page 7 row 161. Please include a figure of the calibration curves for all analytes and a statement about why you are using quadratic curve fitting, and not linear. MS assays should ideally be linear. Small changes in signal intensity with a quadratic calibration curve can potentially lead to big changes in the calculated concentration in comparison to linear regression fitting. 2) Page 14 line 301. Was the source of carryover determined and could this be overcome with a needle washing or valve washing step during analysis? At what concentration was carryover not observed for PALBO and RIBO? Implementation for routine clinical use of this assay would require that carryover be effectively removed in the original sample injection. 3) Matrix effects were evaluated with healthy donor plasma. Were matrix effects observed if experiments were performed with patient specimen, lipemic plasma, or hemolyzed plasma? 4) Qualifier and quantifier MRMs were indicated. Please present data on the consistency of the quantifier/qualifier ratios across the indicated calibration range and also in patient specimens within batch(s). 5) The presented patient sample sized is quite small. Were there specimens from the same patients (or different patients) taking the indicated drugs collected near Cmax and analyzed using the presented calibration range? Or dilution of specimens near Cmax into the calibration range. Patient specimen 8 was above the indicated PALBO calibration range, was this sample diluted into the calibration range? Minor issues and comments: 1) Figure quality is low, please input as higher dpi images 2) Table 6 second row should be “Population size and sex” 3) Page 4 row 75. Remove the word “actually” 4) Page 4 row 78. Change “185,5” to “185.5” 5) Page 7 row 152. Replace “Then, matrix effect was” with “The matrix effect was then” 6) Page 7 row 153 “The CV should be within 15%.” Include a reference or explanation as to why this should be 15%. 7) Page 7 row 166-167. Insert references (eg FDA and EMA guidance documents) regarding the pre-determined acceptance criteria 8) Page 7 row 171. Please indicate the method of S/N calculation 9) Page 9 row 219. Remove “till now”. 10) Page 10 row 226. Include ref to FDA and EMA regarding this criteria. 11) Page 11 row 249. Change “mg/die” to “mg/day” throughout paper. 12) Page 11 line 252. Calculate the retention factor (k) and include values for analytes. 13) Page 13 Table 4. Indicate if the N is from inter- or intra-day analysis of the calibration curve. Please also indicate the (Avg±SD) equation of the calibration curve regression model used across multiple days of analysis. 14) Page 16 line 348. Remove word “Anyway” 15) Please check entire document for grammatical errors. Reviewer #2: Thank you for your submission. This manuscript is well written and statistically sound. While you have increased the concentration range of your compounds, this use of the carryover wash step makes the method not feasibility well constructed for clinical application in certain environments. If I am understanding the method correctly, (line 314) two additional wash step runs need to be included after each unknown sample? This can cause extensive waste of mobile phases, column wear over time as well as instrument issues as the total run time of the entire batch will triple. Line 310 says the washing method was developed to be utilized after ULOQ and unknown patient samples, however Line 314 says two of these washing methods are run back to back to prove no carryover exists. Please make clear whether one or two blank samples run with the washing method are essential after each unknown and ULOQ, for reproducibility purposes. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Simultaneous quantification of palbociclib, ribociclib and letrozole in human plasma by a new LC-MS/MS method for clinical application PONE-D-19-26156R1 Dear Dr. Posocco, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, John Matthew Koomen, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: (No Response) ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: (No Response) ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: (No Response) ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have adequately addressed the concerns for this manuscript. Alternative approaches to reducing carryover for these analytes should be considered in future. Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No |
| Formally Accepted |
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PONE-D-19-26156R1 Simultaneous quantification of palbociclib, ribociclib and letrozole in human plasma by a new LC-MS/MS method for clinical application Dear Dr. Posocco: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. John Matthew Koomen Academic Editor PLOS ONE |
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