Peer Review History
| Original SubmissionJuly 15, 2019 |
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PONE-D-19-19894 Personalized risk stratification through attribute matching using syncope as a clinical example PLOS ONE Dear Dr Casazza Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We would appreciate receiving your revised manuscript in 60 days. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Sandro Pasquali, M.D., Ph.D. Academic Editor PLOS ONE This is a good study with some interestign findings. However it is poorly decribed and reported. The Authors should make any effort to increase the quality of their manuscript. Here are some issues to be addressed. The study is aimed at investigating a new methodology rather than a clinical condition. The title should be reflect the study aim and reworded. For instance, a possibility is “Personalized risk stratification through attribute matching for clinical decision making in clinical conditions with aspecific symptoms: the example of syncope”. The clinical challenge of predicting patient risk in an aspecific condition is well presented in the letter to the Editor. However this remains quite unclear in the abstract. It should be made clear in the abstract that the Authors are investigating a promising methodology for quite generic symptoms and that they picked up syncope as an example. Introduction. The sentence “While CDTs provide information that would be applicable to the nonspecific patient, they lack useful and precise prediction in subjects with specific clinical presentations or needs.” Is probably inaccurate. Prediction tools can be accurate also on a specicific patient, they just need to be informative in terms of variables. For instance CTDs are sometimes very accurate in cancer medicine and they are replacing AJCC TNM staging system as highlighted in the 8th edition of the TMN staging manual. Introduction. Introduction is also likely missing the point. The Authors stated that “Since the well-known limitations of the traditionally derived risk stratification tools in predicting adverse events after syncope”. Are the Authors looking at predicting the cause of a condition that underlie a symptom, that is here syncope? Introduction. It should be stated which is the difference between standard predicting tools and attribute matching. The description about AM is in the method but it seems more appropriate to move it to the Intro to facilitate the reading. Introduction. Study hypothesis and aims should be clearly stated. It should be stated that the Authors compared AM prediction and pre-probability defined by an expert clinican. This is quite interesting as the Authors probably expected that a large dataset works as accurately as an expert clinicians though in a more reporducible way when compared to a clinician. Introduction. AM should be spelled out. Methods. Time frame of the study is needed. Methods. Statistical methodology for AM should be biefly reported and referenced. Methods. Outcome variables and measures not reported. Results. Which are the 8 selected variables? Results. ED physician. This should be reported in the method section and criteria for each category described. Methods/results. The authors mentioned that AM works better than traditional prediction, which may well be the case. However, in the manuscript such comparison has not been made. Since the Authors have a pretty large dataset they should be able to run this comparison. For instance, they can fit a predictive model based on regression for predicting SAE and test in on their 10 prospective patients. Then they should compare AM and traditional prediction based on regression. Method/results. Are 10 patients enough for this study? Was a sample size calculation performed? If not, which is the reason? Discussion. This is a well balanced dìscussion. Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. Thank you for including your ethics statement: "The data for this study were collected and analyzed anonymously. The 10 patients in Table 2 had given written informed to have their data collected and the Internal Review Board had approved their use for this study purpose. IRB approval was obtained by the single primary study authors.". a.Please amend your current ethics statement to include the full name of the ethics committee/institutional review board(s) that approved your specific study. b.Once you have amended this/these statement(s) in the Methods section of the manuscript, please add the same text to the “Ethics Statement” field of the submission form (via “Edit Submission”). For additional information about PLOS ONE ethical requirements for human subjects research, please refer to http://journals.plos.org/plosone/s/submission-guidelines#loc-human-subjects-research. 3. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. We will update your Data Availability statement on your behalf to reflect the information you provide. 4. One of the noted authors is a group or consortium SYNERGI (SYNcope Expert Research Group International). In addition to naming the author group, please list the individual authors and affiliations within this group in the acknowledgments section of your manuscript. Please also indicate clearly a lead author for this group along with a contact email address. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-19-19894R1 Personalized risk stratification through attribute matching for clinical decision making in clinical conditions with aspecific symptoms: the example of syncope PLOS ONE Dear Prof Casazza, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We would appreciate receiving your revised manuscript by Jan 05 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Sandro Pasquali, M.D., Ph.D. Academic Editor PLOS ONE Additional Editor Comments (if provided): Authors have replied to comments raised in the previous review. Although they agreed in principle with the comments, only minor changes have been made throughout the text. More substantial changes are needed to improve the manuscript. The main idea behind this manuscript should be that the presented methodlogy is interesting and promising and a pilot has been conducted to show this. A larger study is clearly needed to validate the method, either looking at syncope or other conditions. In other words, findings are hypothesis generating rather than conclusive. In this regards, authors should make very clear what their next step will be. The manuscript has been sent for additional review and comments of Reviewer#2 which are now available need to be carefully addressed in order to meet requirement for publication in PLOS ONE. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors quote the following sentence in the conclusions: "our study shows that the AM method could be used to predict the risk of adverse events in clinical practice". However, the paper makes no systematic comparison with the state of the art to support this view. Without this comparison the paper turns out to be nothing more than an exercise in style. Several times the authors have been asked for this by the reviewers, with an answer "we did not perform a formal comparison between AM and clinical judgement. Indeed, the purpose of the study was to describe how the AM method could work in conditions like syncope" and "The purpose of this study was not to make a comparison between AM and the traditional prediction methods. Indeed, we cannot state that AM works better, because a formal comparison would require thousands of patients in the reference database for AM to work. As stated in the study aim, we only wanted to test how AM could work with a real life example and to show that it could allow a different approach". These answers, from my personal point of view, indicate a lack of attention in the normal scientific approach in which, if a method is to be shown, all the specifications for comparison with the other methods must also be provided. Please, provide: - variable selection criterion and cut-points justification - prediction accuracy measure, in order to enable the reader to judge the method. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Personalized risk stratification through attribute matching for clinical decision making in clinical conditions with aspecific symptoms: the example of syncope PONE-D-19-19894R2 Dear Dr. Casazza, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Sandro Pasquali, M.D., Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Also this time the reviewers comments are well adressed. The manuscript now offers a more balanced view compared to previous versions and is more formally robust also from a methodological viewpoint (i.e. addiction of a logistic regression analysis and changes in discussion/conclusions). |
| Formally Accepted |
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PONE-D-19-19894R2 Personalized risk stratification through attribute matching for clinical decision making in clinical conditions with aspecific symptoms: the example of syncope Dear Dr. Casazza: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Sandro Pasquali Academic Editor PLOS ONE |
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