Peer Review History

Original SubmissionNovember 4, 2019
Decision Letter - Lucia R. Languino, Editor

PONE-D-19-30700

Prediction of metastatic prostate cancer by prostate-specific antigen in combination with T stage and Gleason Grade. Nationwide, population-based register study

PLOS ONE

Dear Dr. Thomsen,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

The image quality in Figure 1 needs to be improved.

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We look forward to receiving your revised manuscript.

Kind regards,

Lucia R. Languino, Ph.D.

Academic Editor

PLOS ONE

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http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. We noticed you have some minor occurrence(s) of overlapping text with the following previous publication(s), which needs to be addressed:

http://dx.doi.org/10.1016/j.eururo.2017.06.036

https://doi.org/10.1080/0284186X.2019.1662084

https://doi.org/10.1111/bju.14563

In your revision ensure you cite all your sources (including your own works), and quote or rephrase any duplicated text outside the Methods section. Further consideration is dependent on these concerns being addressed.

3. In the ethics statement in the manuscript and in the online submission form, please provide additional information about the patient records/samples used in your retrospective study. Specifically, please ensure that you have discussed whether all data/samples were fully anonymized before you accessed them and/or whether the IRB or ethics committee waived the requirement for informed consent. If patients provided informed written consent to have data/samples from their medical records used in research, please include this information.

4. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions.

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We will update your Data Availability statement on your behalf to reflect the information you provide.

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[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

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Reviewer #1: Yes

Reviewer #2: Yes

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

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Reviewer #1: Yes

Reviewer #2: Yes

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Reviewer #1: Yes

Reviewer #2: Yes

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5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: “Prediction of metastatic prostate cancer by prostate-specific antigen in combination with T stage and Gleason Grade. Nationwide, population-based register study “

Thomsen et al.

Submitted to PLOS One

Higher T stage, Gleason grade, and serum PSA have previously been associated with bone metastases in prostate cancer patients. PSA above 100ng/mL has been used as a surrogate for metastatic prostate cancer, based on previous studies. However, two recent imaging studies suggested that PSA above 100ng/mL was associated with only a 45-75% presence of metastasis, and there are some concerns with selection bias in these studies.

Thomsen and colleagues sought to avoid the shortcoming of previous studies, and investigated the proportion of men with metastatic prostate cancer in groups defined by T stage, Gleason Grade Group (GGG), and serum PSA levels; and to determine if PSA can rule in metastatic disease when combined with T stage and GGG.

Conclusions are: 1) Advanced T stage, higher GGG, and higher PSA were strongly related to bone metastatic prostate cancer; and 2) PSA, regardless of cut-off, could not correctly identify men with metastatic disease with either sensitivity or specificity. Based on the second conclusion, omitting bone imaging could not safely be suggested. Main take home is metastatic prostate cancer could not be ruled in with sufficient accuracy by any combination of T stage, Gleason grade and PSA.

Critique:

Authors present the data and draw conclusions nicely. The only (minor) concern is the image quality of Figure 1. If a less “fuzzy” image could be supplied, that would be beneficial.

Reviewer #2: The goal of the manuscript “Prediction of metastatic prostate cancer by prostate-specific antigen in combination with T stage and Gleason Grade. Nationwide, population-based register study” is to assess whether serum PSA levels combined with T stage and Gleason Grade can be utilized to rule in metastatic prostate cancer. The study utilized a large Swedish cohort of patients (102,076 men) diagnosed with prostate cancer between 2006 and 2016. The study is well presented and suggests a necessity of imaging to detect bone metastases in men with advanced prostate cancer as serum PSA levels in combination with T stage and Gleason score could not accurately rule in metastatic prostate cancer. Publishing such a study will be valuable.

Minor concern that needs to be addressed before publication:

1. The authors need to provide a high resolution image for Fig 1.

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Reviewer #1: No

Reviewer #2: No

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While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 1

Dec 17 2019

Re: PONE-D-19-30700

Prediction of metastatic prostate cancer by prostate-specific antigen in combination with T stage and Gleason Grade. Nationwide, population-based register study

PLOS ONE

The image quality in Figure 1 needs to be improved.

Answer: Figure 1 with higher resolution is included in the resubmission.

Journal requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

Answer: the ms has been updated accordingly

2. We noticed you have some minor occurrence(s) of overlapping text with the following previous publication(s), which needs to be addressed:

http://dx.doi.org/10.1016/j.eururo.2017.06.036

https://doi.org/10.1080/0284186X.2019.1662084

https://doi.org/10.1111/bju.14563

In your revision ensure you cite all your sources (including your own works), and quote or rephrase any duplicated text outside the Methods section. Further consideration is dependent on these concerns being addressed.

Answer: All studies use data from PCBaSe and there are therefore some parts of the methods section that is quite similar but where we reference other cohort profile publications. We reread all three papers and compared to the current study. We have not been able to find any overlapping text outside the methods section. If there are any sections that you deem necessary to reference please inform us of any overlapping text. Thank you.

3. In the ethics statement in the manuscript and in the online submission form, please provide additional information about the patient records/samples used in your retrospective study. Specifically, please ensure that you have discussed whether all data/samples were fully anonymized before you accessed them and/or whether the IRB or ethics committee waived the requirement for informed consent. If patients provided informed written consent to have data/samples from their medical records used in research, please include this information.

Answer:

Our statement regarding ethics in our submitted ms read: “This study was approved by the Research Ethics Board at Uppsala University and included all men diagnosed with prostate cancer in 2006-2016 in NPCR.

The Research Ethics Board at Uppsala University approved of the linkages in our project (PCBaSe 2016-239). We received a study file from Statistics Sweden and the National Board of Health and Welfare where the person identity number for men in the National prostate Cancer Register had been replaced by a code. This means that the data set is pseudononymized, but due to the large number of variables this dataset is still considered not anonymized when deleting this code. The following restrictions apply: we are not allowed to share data on individuals with other researchers, nor or we allowed upload such data on an open server. However, we can provide access to the dataset on a remote server on demand. On the Research platform, data can be uploaded and then accessed by external researchers. However, no individual data are allowed to leave the platform but aggregated data in the form of figures and Tables can be exported.

External researcher should contact the corresponding author who will direct the demand for data to the PCBaSe reference group who will then provider the access described above.

4. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions.

In your revised cover letter, please address the following prompts:

a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent.

RE: See above

b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories.

We will update your Data Availability statement on your behalf to reflect the information you provide.

RE: See above

5. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information.

Answer: the ms has been updated accordingly

Attachments
Attachment
Submitted filename: METS_review answer.docx
Decision Letter - Lucia R. Languino, Editor

Prediction of metastatic prostate cancer by prostate-specific antigen in combination with T stage and Gleason Grade. Nationwide, population-based register study

PONE-D-19-30700R1

Dear Dr. Thomsen,

We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements.

Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication.

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With kind regards,

Lucia R. Languino, Ph.D.

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Formally Accepted
Acceptance Letter - Lucia R. Languino, Editor

PONE-D-19-30700R1

Prediction of metastatic prostate cancer by prostate-specific antigen in combination with T stage and Gleason Grade. Nationwide, population-based register study

Dear Dr. Thomsen:

I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

For any other questions or concerns, please email plosone@plos.org.

Thank you for submitting your work to PLOS ONE.

With kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Lucia R. Languino

Academic Editor

PLOS ONE

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