Peer Review History
| Original SubmissionSeptember 26, 2019 |
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PONE-D-19-27091 Multigene phylogeny and taxonomy of Torula hydei and Dendryphion hydei spp. nov. from herbaceous litter in northern Thailand PLOS ONE Dear Dr. PROMPUTTHA, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We would appreciate receiving your revised manuscript by Dec 15 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
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Hymenogaster huthii. Stielow et al. 2010, sp. nov. [urn:lsid:indexfungorum.org:names:518624] You will need to contact either Mycobank or Index Fungorum to obtain the GUID (LSID).
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Thank you for stating the following in the Acknowledgements Section of your manuscript: "The authors are grateful to the Mushroom Research Foundation, Chiang Mai, Thailand and 366 Key Research Program of Frontier Sciences of the Chinese Academy of Sciences (grant no. 367 QYZDY-SSW-SMC014) for supporting this research. We also acknowledge that Biology 368 Experimental Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese 369 Academy of Sciences provide molecular laboratory facilities for molecular work. Rungtiwa 370 Phookamsak thanks CAS President’s International Fellowship Initiative (PIFI) for young staff 371 (grant no. Y9215811Q1) and National Science Foundation of China (NSFC) project code 372 31850410489 (grant no. Y81I982211) for financial support. Itthayakorn Promputtha grateful to thank Chiang Mai University for partially support 373 of this research work. Rajesh Jeewon 374 would like to thank Mae Fah Luang University for giving him the opportunity as a visiting 375 professor to the Center of Excellence in Fungal Research and University of Mauritius for research 376 support. Peter E Mortimer would like to thank the National Science Foundation of China and 377 the South East Asian Biodiversity resources Institute, Chinese Academy of Sciences, for 378 financial support under the following grants: 41761144055, 41771063, Y4ZK111B01. 379 Mingkwan Doilom would like to thank the 5th batch of Postdoctoral Orientation Training 380 Personnel in Yunnan Province and the 64th batch of China Postdoctoral Science Foundation. 381 Jun-Fu Li thanks to Emeritus Prof. Kevin D. Hyde, Dr. Shaun Pennycook, Dr. Dhanushka 382 Wanasinghe, Hong-Bo Jiang, Dr. Zonglong Luo for their available suggestions and help." We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgements section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. * Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: "No". [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Dear Junfu Li and co-authors, Please see the attachment. I have included several comments in the attached manuscript. Basically, this is a well written manuscript, however, i am not sure the content is strong enough for the Plos ONE. Please remove the unnecessary paragraph from the introduction, and please improve your discussion. Most parts related to the Discussion should move to the notes part. Please improve your phylogeny by including Rutola. Please refer "The Genera of Fungi – G5: Arthrinium, Ceratosphaeria, Dimerosporiopsis, Hormodochis, Lecanostictopsis, Lembosina, Neomelanconium, Phragmotrichum, Pseudomelanconium, Rutola, and Trullula" Reviewer #2: Note: The following minor corrections may please be attended - Page 8, Lines 26-27: Abstract: Delete the first sentence. Start the paragraph from second sentence – During our studies.... Pages 8-9, Lines: 44-48: Replace the sentences with this: Species in Torulaceae are known only by their asexual morphs which are characterized as follows:Superficial, effuse, greyish brown to black, powdery colonies; micro- or macronematous conidiophores, with or without apical branches; doliiform to ellipsoid or clavate, brown, smooth to verruculose, mono- to polyblastic conidiogenous cells which often remaining cupulate; subcylindrical, phragmosporous, acrogenous, brown, dry, smooth to verrucose conidia characteristically produced in branched chains Page 9, L.50: accepted Dendryphion Wallr., besides Torula, within Torulaceae in Pleosporales. Page 9, L.54: relationships of the taxa within the family ... Page 11, L.94: northern Thailand. Among collected samples, Dendryphion hydei is recovered as another new ..... Page 11, L.96: updated phylogenetic tree with our new taxa for the family Torulaceae is provided in this ... Page 12, L.113: Single conidium isolation .. Page 24, L. 287: semi-macronematous, mononematous, .... Page 24, L. 289: subglobose, arising from prostrate hyphae Page 25, L. 315: al. [8] who re-classified Torula and .... Page 25, L. 316: ......... Subsequent authors introduced new genera .... Page 25, L. 320: Fungorum [23], but most of the described species lack DNA ..... ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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Multigene phylogeny and taxonomy of Dendryphion hydei and Torula hydei spp. nov. from herbaceous litter in northern Thailand PONE-D-19-27091R1 Dear Dr. PROMPUTTHA, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Tzen-Yuh Chiang Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Dear Author Thanks for addressing the comments raised during previous round. I am happy with the MS and now it ready for publish Reviewer #2: The authors have incorporated all corrections and suggestions made by the reviewers' and the manuscript is in very good shape. The paper is now recommended for publication. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No |
| Formally Accepted |
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PONE-D-19-27091R1 Multigene phylogeny and taxonomy of Dendryphion hydei and Torula hydei spp. nov. from herbaceous litter in northern Thailand Dear Dr. PROMPUTTHA: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Tzen-Yuh Chiang Academic Editor PLOS ONE |
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