Peer Review History
| Original SubmissionAugust 23, 2019 |
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PONE-D-19-23845 Abnormal LAMP1 glycosylation may play a role in Niemann-Pick disease, type C pathology PLOS ONE Dear Dr. Porter, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. In particular, some loading and purity controls are missing and must be included. The images in Fig 4 and 5 are poor quality, must be improved. Please include the information requested by reviewer 2 in the materials and methods section. Some conclusions are not fully supported by data; therefore, they should be re-elaborated or further data should be provided. The discussion can be improved by re-phrasing some sentences and discussing data already published, showing altered glycosylated proteins in NPC. We would appreciate receiving your revised manuscript by Nov 04 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Andrea Dardis, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. PLOS ONE now requires that authors provide the original uncropped and unadjusted images underlying all blot or gel results reported in a submission’s figures or Supporting Information files. This policy and the journal’s other requirements for blot/gel reporting and figure preparation are described in detail at https://journals.plos.org/plosone/s/figures#loc-blot-and-gel-reporting-requirements and https://journals.plos.org/plosone/s/figures#loc-preparing-figures-from-image-files. When you submit your revised manuscript, please ensure that your figures adhere fully to these guidelines and provide the original underlying images for all blot or gel data reported in your submission. See the following link for instructions on providing the original image data: https://journals.plos.org/plosone/s/figures#loc-original-images-for-blots-and-gels. In your cover letter, please note whether your blot/gel image data are in Supporting Information or posted at a public data repository, provide the repository URL if relevant, and provide specific details as to which raw blot/gel images, if any, are not available. Email us at plosone@plos.org if you have any questions. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In this manuscript Cawley et al. show an altered glycosylation pattern of LAMP-1 which correlates with disease pathology. In many figures loading controls are missing and should be included (details below). The findings are interesting and support previous studies showing altered glycosylated patterns in NPC. Some relevant papers have been discussed; however other key papers must be included in the discussion. For instance, it has been shown that NPC2 is overexpressed in Npc1-/- cells and tissues and present changes in glycosylation patterns (PMID: 15896196, PMID: 16374838). Furthermore, ApoE also shows altered glycosylation patter in NPC (PMID: 20070866). To facilitate the understanding of the article, some changes are suggested: Figure1: Figure 1A doesn’t add much information, it can be supplementary. Figure 1B: Loading control is missing. An interesting question that the authors can address is how is LAMP-1 overexpressed? Is it transcriptionally regulated? This can be easily analyzed by q-PCR analysis and would complement the Figure 1B. Figure 2: If actin is added to Figure 2B, then 2A doesn’t add any info. It is highly recommended to add loading controls. Figures 4 and 5: Both Figures should be merged. High magnification images are necessary. The images shown in supplementary Fig 2S are more informative than the currently shown in fig 4. Please replace them and show comparative images for Npc1-/- tissues. Figure 6: Nice idea; however, some controls are missing. A control showing the purity of the isolations is necessary, similarly to what is shown in Fig 3S. In addition to GFAP a microglial marker should be analyzed (CD11b or others) Figure 7: nice work here, Actin is missing in Fig 7C. Reviewer #2: This study identifies and characterizes the presence of a high level of glycosylated form of LAMP1 in the cerebellum and other brain regions of Niemann Pick C1 mice. Hyperglycosylated LAMP1 appears to be associated to disease progression and is rescued by the treatment with HPβCD started at pre-symptomatic stages of the disease. Interestingly, a glycosylated form of LAMP1 is also observed in cerebellar samples obtained from NPC patients, but not in those obtained from patients affected by different neurodegenerative diseases. In addition, the study provides evidence that this post-translationally modified form of LAMP1 is linked to microglia-mediated neuroinflammation. Experiments presented are well conceived and data provided add a novel and relevant contribution to the knowledge of pathogenic mechanisms of the NPC disease. There are, however, some criticisms that the authors should address to strengthen the major findings of their study. Specific issues. Figure 1. Given that the estimated MW of the brain form of LAMP1 is ≈ 75 kDa, the lack of a MW reference standard near this range size appears a bit peculiar. An additional reference standard between 62 and 98 kDa would strengthen this estimate. The authors discuss the findings displayed by panel B in terms of quantitative variation of protein abundance. However, this inference is not circumstantiated with loading controls. Figure 2. Western blot displayed in panel B and quantitative analyses of panel C refer to protein extracted from anterior, middle and posterior part of the cerebellum. However, no detail is given on how these compartments were separated one from each other (i.e. which lobules were included in each region?). The procedure should be described under materials and methods. Figure 3 (A, B). The treatment with N-Glycanase and EndoH appears to be accompanied by a sensible decrease of protein abundance, as suggested by the weaker intensity of bands corresponding to treated extract loadings. The authors should comment on this. It might depend on antibody affinity for modified/unmodified protein forms, respectively. Once again, loading controls are missing, whereas their presence would contribute to clarify this issue. Figure 4. LAMP1 immunostaining of panel B is consistent with the presence of LAMP1 in Bergmann glia (BG), as stated by the authors. However the merged picture shown in panel C, does not properly represent this feature, showing a very faint and sparse red staining (LAMP1) that is masked by the strong Calbindin staining of Purkinje cells (PC), perhaps. This is somehow inconsistent with the picture displayed by panel A of Fig. 5, which clearly shows the presence of LAMP1 in PC somata. To my opinion, information of Figure 4 is somehow redundant in light of data displayed in Fig. 5. Figure 5. Cerebellar lobules displayed in the various panels are not comparable, whereas the typical spatiotemporal spread out of the NPC disease within the cerebellum makes this issue worth of careful attention. I strongly encourage the authors to consistently select the same/similar (anterior, middle, posterior) lobules for displaying. The statement: “There was weak co-staining with GFAP, a marker of reactive astrocytes”, is only partly correct, since GFAP also stains Bergmann glia (BG). Noteworthy, besides astrocytosis, previous studies have reported a number of anomalies of BG in mouse models of NPC since early stages of the disease. In light of the presence of LAMP1 in BG of wild-type mice, the sparse/decreased LAMP1 presence in BG of NPC mice could be a sign of the disease. This possibility should be taken into account by the authors. Figure 6. The emphasis that the authors deserve to the intermediate sized LAMP1, to my opinion, is not supported by the poor definition of this band. Minor points The discussion is a bit too long and the overall readability of the manuscript can be improved by re-phrasing some sentences. As an example, see: “The disease is autosomal recessive, where patients………….to other cellular organelles”. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Andres D Klein Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Abnormal LAMP1 glycosylation may play a role in Niemann-Pick disease, type C pathology PONE-D-19-23845R1 Dear Dr. Porter, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Andrea Dardis, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The new figures have made the manuscript much better than the first one. All the comments were property addressed. Happy Holidays! Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Andres D Klein Reviewer #2: No |
| Formally Accepted |
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PONE-D-19-23845R1 Abnormal LAMP1 glycosylation may play a role in Niemann-Pick disease, type C pathology Dear Dr. Porter: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Andrea Dardis Academic Editor PLOS ONE |
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