Peer Review History
| Original SubmissionOctober 8, 2019 |
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PONE-D-19-28136 Virulence beneath the fleece; a tale of foot-and-mouth disease virus pathogenesis in sheep PLOS ONE Dear Dr. Stenfeldt, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please pay close attention to the concerns raised by reviewer # 2. You are requested to address the issues raised by both the reviewers with special emphaisis with issues raised by reviewer # 2. We would appreciate receiving your revised manuscript by Jan 03 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Aftab A. Ansari, PhD Academic Editor PLOS ONE Journal Requirements: 1. When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. We note that you have included the phrase “data not shown” in your manuscript. Unfortunately, this does not meet our data sharing requirements. PLOS does not permit references to inaccessible data. We require that authors provide all relevant data within the paper, Supporting Information files, or in an acceptable, public repository. Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Carolina Stenfeldt et al. explored the tissue- and cellular tropism of early and late stages of FMDV infection in sheep following different routes of simulated natural virus challenge. It was determined that the paraepiglottic- and palatine tonsils, as well as the nasopharyngeal mucosa were susceptible to primary FMDV infection in sheep. In addition, the authors found that the persistent FMDV infection is located to the paraepiglottic- and palatine tonsils in sheep, which is different with that in cattle. A strict epithelial tropism was identified during both early and late phases of infection. A large amount of meaningful studies on FMDV pathogenesis in pigs and cattle had been conducted by Professor Jonathan Arzt’s lab previously. This study provided more detailed information and insight in FMDV pathogenesis in sheep. Some clarifications will improve the manuscript. 1) The authors need to describe in detail in the Materials and Methods section about the statistical analysis method. 2) I think Figure 1 should be converted to a table. So does Figure 4. 3) The flaw of this study is that there were only two animals in each group. The significance of the results was weak. How did the authors make conclusion when there were different results in two animals. Such as, the comparably high viral RNA quantities could be detected in the Submandibular LN in animal 1301, but not in that of 1302. 4) I do believe that some conclusions could only be made when the viral distribution was consistent in both of the two infected animals. 5) The virus replication was extremely high in animal 1311, however no fever was observed. Was there a correlationship between the fever occurrence and viral replication level at 48 h post challenge? 6) Magnification and animal number should be marked in Figure 2, 3 and 5 but not just in the legends. 7) Although the authors have mentioned the lack of detection of FMDV RNA in the dose/14 day vaccination group with clinical manifestation of FMD, more discussion should be added in the text. 8) Define acronyms the first time one appears in the text. 9) Could the authors summarize the disparity of tissues of infection sites among different animals in a table? It will make present data more meaningful and easily understood. Reviewer #2: The manuscript by Stenfeldt et al. presents relevant and detailed information on the FMDV pathogenesis in sheep, working both at early and later times post-infection with different experimental infection protocols, in naive and vaccinated animals (immunized with a heterologous vaccine strain). Interestingly, these results demonstrate that while the early progression of the infection shares similarities with cattle, the persistence infection occurs in different tissues for ovine species, involving palatine tonsils (as described in buffalos). Similarly interesting is the finding that early infection pattern was also similar to pigs due to the early virus replication in the tonsils in the oropharynx and laryngopharynx. It is also important to note that, as previously described for cattle and swine, microscopic FMDV infection seems tightly restricted to epithelial cells in mucosal tissues, at both early and late infection times. Comments and questions: - It is interesting to note that animal #1301, which showed a generalization of the symptoms (fig, 1), was also the one to present the highest levels of FMDV detection in serum and the lower respiratory tissues (lung). Is it possible to hypothesize that the lungs may act as a portal to amplify viral titers, which in turn may allow the infective virus to reach distal tissues (such the interdigital cleft and coronary bands) through the peripheral circulation? Since this has been already proposed for cattle, it may be worth to mention such a hypothesis also in the discussion. - One of the INP-infected animals showed a correlation between the existence of macroscopic lesions on the dental pad and in the interdigital cleft, with the detection of viral RNA in both tissues (4.50 and 7.40, respectively). However, none of the aerosol infected animals exhibited macroscopic lesions in any of these lesion predilection sites in spite that both individuals showed high levels of viral RNA detection (6.59/8.56 and 3.98/7.85, respectively). Is it possible to relate such differential progression of the symptoms to the route infection? - What are the potential physical or anatomical explanations for the differential levels of infection in the dorsal nasopharyngeal mucosa in those animals infected by INP- or aerosol-inoculation? - In figure 4, animals receiving a double dose of FMD vaccines showed (mild) clinical scores while those receiving a single vaccine dose did not (both groups challenged at 14 dpv). However, as stated in the discussion, all individuals receiving double vaccine dose were negative to the detection and isolation of FMDV RNA up to 35 dpc. Do the authors have any hypothesis on how a prophylactic treatment could prevent persistent infection but not clinical symptoms? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Mariano Perez-Filgueira [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-19-28136R1 Virulence beneath the fleece; a tale of foot-and-mouth disease virus pathogenesis in sheep PLOS ONE Dear Dr. Stenfeldt, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. As stated in the revised critique, the authors have done an excellent job in addressing all the concerns rasied by the reviewers except two minor issues remain. First of all, the same data that appear in Fig. 1 and 4 do not need to be re-expressed in a Table form even if it is part of the supplementary data section as they are redundant and therefore the 2 supplementary tables are recommended for deletion. In addition, the authors are kindly requested to add the names of the animals and the magnification in Fig. 2, 4 and 5 as it greatly assists readers in following the narrative. We would appreciate receiving your revised manuscript by Jan 20 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Aftab A. Ansari, PhD Academic Editor PLOS ONE Additional Editor Comments (if provided): I believe the authors have done an excellent job in addressing the concerns of the reviewers. However, two minor issues remain. First of all, I think that the addition of the same data in Table format for Figs. 1 and 4 is redundant. The authors should delete the Supplementary tables. Secondly, I do think that the addition of the animal numbers in the figures makes it easier to follow the data and I strongly urge the authors to insert the animal numbers and magnification in Fig. 2, 3 and 5. [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Virulence beneath the fleece; a tale of foot-and-mouth disease virus pathogenesis in sheep PONE-D-19-28136R2 Dear Dr. Stenfeldt, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Aftab A. Ansari, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-19-28136R2 Virulence beneath the fleece; a tale of foot-and-mouth disease virus pathogenesis in sheep Dear Dr. Stenfeldt: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Aftab A. Ansari Academic Editor PLOS ONE |
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