Peer Review History
| Original SubmissionJuly 22, 2019 |
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PONE-D-19-20624 Smoking trajectories and risk of stroke until age of 50 years – the Northern Finland Birth Cohort 1966 PLOS ONE Dear Dr. Rissanen, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We would appreciate receiving your revised manuscript by Oct 27 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Thomas Behrens Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For more information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). 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Additional Editor Comments (if provided): In addition to our reviewer’s comments, there are several issues that need to be discussed and elaborated in more detail before publication can be granted. Major: 1. As also noted by our reviewer, the biggest limitation of your work lies in the long gaps of 16 years between the different surveys time points. This needs to be critically discussed in more detail. 2. Further limitations to be discussed include the limited response at the last survey (56% of the original cohort), which may also create selection effects. Are the cohort members representative for the population, i.e. is the high smoking prevalence also seen in the general population? The authors should consider to introduce population weights to approach representativeness. 3. Item response is also a severe limitation, as the authors note (27.5%). Multiple imputation has been used, but the authors do not report results without application of imputation. Please note that the abbreviation MI for multiple imputation may be misleading (myocardial infarction) and should therefore be avoided. 4. The number of pack-years by age 46 appears to be rather low (15.8 pack-years on average), given that subjects started early (at 16 years of age). Is this number plausible/representative for the Finnish population? 5. I do not agree with the notion that a non-significant result indicates “no association”. Most trajectories show positive associations, which fail to demonstrate statistical significance though due to the limited power (as the authors acknowledge). Interpretation of “significance” as an implied “truth” when associations of 1.4 or more are considered lacking and HRs of 1.08 for pack-years are seen as important, is a severe distortion of the scientific process. Similarly, late quitters apparently do not indicate an association (HR 1.08, or <1), whereas risk per pack-years by age 46 years show 1.04, but with statistical significance? 6. Some analyses in Tab. 3 need to be clarified: Cumulative exposure: - Risk by pack-year before age 31 years? What was analysed? - Starting-Ending age? What was modelled? Minor: Abstract: Please state confounders explicitly. Methods: Please state how educational level was classified in more detail (years of education, which degrees?) How was PA measured? Results: Model fit parameters should be reported. Fig. Axes require description. Tables: - Tab. 2: Indicate all units in brackets. What is reported: means, medians? - What is the criterion to be coded as non-smoker? NS reported on average 1.5 pack-years by age 46 years. Please add definition in Methods. - Please add footnotes for all abbreviations used. References: Some references are not according to PlosOne style (e.g., journal titles of Ref. 21, 22, 29, and 33 need to be abbreviated. Please add dois for all references. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Here you can find the overall impression I got from the manuscript (MS). The line by line comments you can find as an attachment. Decision: Few major revisions & several minor revisions. The strength of the study is that it has three different approaches to study the association between smoking and stroke risk. It studies the association between smoking trajectories, cumulative smoking exposure and starting and ending age of smoking with stroke risk. As the scientific studies that examine heterogeneous trajectory patterns of smoking using finite mixture models has only started to accumulate, this paper is timely. However, conducting the trajectory modelling and especially reporting about the statistical analyses in the Results are not described in sufficient detail. The reader does not get all the needed information for evaluating the identification of trajectories and interpreting the sensitivity analyses. The discussion could be more profound. For example, smoking has been studied in three time points (which is the minimum demand for identifying trajectories and therefore acceptable number), but the age points are rather long apart. Because of this, some smoking patterns may not be observed. Naturally, this matter cannot be fixed afterwards, but it could be discussed. Also, the paragraphs in the Discussion are partly disconnected. Many statements and terms are unclear and terms need to be defined better / earlier in the MS. Additionally, the use of references is not precise in many parts, and references are missing. I suggest to rethink which references to put in the Introduction and which in the Discussion in order to have more fluent story and to avoid repetition. The amount of my suggestions may give the expression that there are lot of revisions to do. Please, do not worry: most of my comments are minor ones. Even if I happened to notice misspelling, I corrected that too - just to help to improve your MS. Nonetheless, this MS could still be revised in language. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-19-20624R1 Smoking exposure trajectories and risk of stroke until age of 50 years – the Northern Finland Birth Cohort 1966 PLOS ONE Dear Dr. Rissanen, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Based on our reviewer's recommendations, several critical points in your manuscript appear to remain unresolved. Therefore my decision ist still "Major revision". We would appreciate receiving your revised manuscript by Dec 15 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Thomas Behrens Academic Editor PLOS ONE Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: MAJOR REVISIONS: I can see the time and effort you have put in improving the manuscript. And indeed, it has improved. The definitions of variables and terms used are clearer. Methods are described better and the reader gets the information needed. The strength of the study still is the long follow-up time and new approach to study the association between smoking and stroke risk. While the reporting of the trajectory modelling has improved considerably, there is a major limitation that can be seen now that reporting of the modelling is more precise. When interpreting the new Table 2 (Model fit parameters of trajectory models with 1-6 classes) it is difficult to understand why the researchers ended up choosing the 5-class solution as the optimal one for smoking trajectories. It seems that the AIC-values and BIC-values still decrease quite a lot in the 6-class solution. The sample sizes of the classes are still acceptable on the 6th step of the modelling. The proportion of participants in the smallest class is actually higher in the 6-class solution than in the 5-class solution. Additionally, the average posterior probabilities still seem to be very high – which is of course a good thing. For all of the abovementioned points, I do not find any reasons why the researchers did not continue even further with the modelling and why they chose the 5-class solution over the 6-class solution. This is the reason why I, unfortunately, cannot accept the manuscript to be published as it is. I suggest the manuscript to be rejected if no changes will be done for the trajectory modelling and if the results will not be changed according to the better fitted class solution. This is a reliability issue since the 5-class solution might not give the most reliable description of the smoking behavior of the study population. Another major issue is the Discussion. While it has improved, there are still some inconsistencies and the discussion and conclusions between your own results and previous literature is not always logical. I have made some comments concerning the Discussion below. MINOR REVISIONS: -Terminology: I was actually thinking even on the first round of comments why you use the term smoking exposure, and not simply smoking? I just forgot to mention about it on the previous round. Smoking exposure usually includes active and passive smoking while your study concentrates only on active smoking. -Typos: There are still typos in the text, for example, on lines 49 and 52 (periods lacking) and on line 58 (word “and” lacking). The typos should be checked once more. -Lines 63-65: While the use of references has improved, there still are some imprecise ways to refer to other studies. For example, the references 18 and 19 are not studying longitudinal trajectories of smoking which means that the phrase in lines 63-65 is not accurate. Rephrase. -Line 165: Thank you for adding the descriptions of the variables used. Now the reader knows, for example, that you use measures of leisure-time physical activity (LTPA), not physical activity (PA). I suggest to use the term LTPA instead of PA through-out the text. -Lines 301-309: The reasoning is hard to follow because the comparing and contrasting is a bit disconnected. According to your results, the smoked-pack years show the dose dependent effect to stroke risk and the continuous smoking trajectory shows the meaning of smoking duration to stroke risk, right? Please be clear what you mean by dose and duration with your own variables and think through the comparing of your results to other studies (e.g., which of your results are in line with previous studies and which are contradictory when considering the effect of dose and duration of smoking). -Lines 317-320: First, the part “reversal arterial changes” is a bit difficult to understand since you do not say whether you mean positive or negative changes, you just say reversal. The reader will understand what you mean, but you could state it clearer. All in all, this is an interesting sentence. However, I find your sentence following the reference number 43 to be a bit confusing. Your findings actually are contradictory to the findings of the reference 43, right? You found the early quitters to have increased risk for haemorrhagic stroke. Maybe you could think through which of your results to link to the reference number 43. -Line 326: Would it be better to place your findings concerning the risk of stroke for the continuous smokers after the reference number 44? Just a suggestion. -Think when to use the term age and when the term time (e.g., lines 303 and 384). -Reference list: The reference system that you use has not worked as you probably hoped. I saw at least in references 19 and 34 that the names of the authors have not been transferred correctly. It is only fair that the authors’ names are written correctly since this is the way the researchers get acknowledged from their work. Please check the reference list. -Figure 1: This figure has improved and it is clearer. However, the name “middle quitters” does not really say a lot. Could it be, for example, quitters in mid-age or late quitters? I know it’s tricky to give names to the classes and try an separate them from one another. Still, maybe you could reconsider this name once more. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Smoking trajectories and risk of stroke until age of 50 years – the Northern Finland Birth Cohort 1966 PONE-D-19-20624R2 Dear Dr. Rissanen, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Thomas Behrens Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Now it was a pleasure to read your manuscript. The Discussion was clearer and the reasoning for choosing the number of trajectory classes was better. Thank you for your comprehensive answers to my comments. I myself also learned something from them which is always nice in the reviewing process. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No |
| Formally Accepted |
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PONE-D-19-20624R2 Smoking trajectories and risk of stroke until age of 50 years – the Northern Finland Birth Cohort 1966 Dear Dr. Rissanen: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Prof. Thomas Behrens Academic Editor PLOS ONE |
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