Peer Review History
| Original SubmissionJuly 9, 2019 |
|---|
|
PONE-D-19-19270 The Clinicopathological Significance of Thrombospondin-4 Expression in the Tumor Microenvironment of Gastric Cancer PLOS ONE Dear Dr. Yashiro, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. (1) Immunostaining of Podoplanin (PDPN) as a widely accepted marker of cancer associated fibroblasts (CAFs) (2) Detailed methodological description of CAFs and normal-associated fibroblasts (NAFs) and presentation of their images (3) Explanation about THBS4 expression in stroll cells but not cancer cells in primary gastric cancer, as well as presentation of more clear images of THBS4 immunostaining, and results of THBS4 immunostaining (4) Presentation and statistical analysis related to Western blot analysis (5) Refinement of Kaplan-Meier analysis (6) Additional experiments or discussion on the functions of thrombospondin-4 (THBS4) in CAFs (7) Other issues pointed out by Reviewers We would appreciate receiving your revised manuscript by Sep 20 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Masaru Katoh, M.D., Ph.D. Academic Editor PLOS ONE Journal Requirements: 1. When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. Thank you for stating the following in the Acknowledgments Section of your manuscript: This study is partially founded by KAKENHI Grant-in-Aid for Scientific Research, Nos. 18H02883 (M.Y.). We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: The author(s) received no specific funding for this work. Additionally, because some of your funding information pertains to [commercial funding//patents], we ask you to provide an updated Competing Interests statement, declaring all sources of commercial funding. In your Competing Interests statement, please confirm that your commercial funding does not alter your adherence to PLOS ONE Editorial policies and criteria by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests. If this statement is not true and your adherence to PLOS policies on sharing data and materials is altered, please explain how. Please include the updated Competing Interests Statement and Funding Statement in your cover letter. We will change the online submission form on your behalf. 3. PLOS ONE now requires that authors provide the original uncropped and unadjusted images underlying all blot or gel results reported in a submission’s figures or Supporting Information files. This policy and the journal’s other requirements for blot/gel reporting and figure preparation are described in detail at https://journals.plos.org/plosone/s/figures#loc-blot-and-gel-reporting-requirements and https://journals.plos.org/plosone/s/figures#loc-preparing-figures-from-image-files. When you submit your revised manuscript, please ensure that your figures adhere fully to these guidelines and provide the original underlying images for all blot or gel data reported in your submission. See the following link for instructions on providing the original image data: https://journals.plos.org/plosone/s/figures#loc-original-images-for-blots-and-gels. In your cover letter, please note whether your blot/gel image data are in Supporting Information or posted at a public data repository, provide the repository URL if relevant, and provide specific details as to which raw blot/gel images, if any, are not available. Email us at plosone@plos.org if you have any questions. 4. In your Data Availability statement, you have not specified where the minimal data set underlying the results described in your manuscript can be found. PLOS defines a study's minimal data set as the underlying data used to reach the conclusions drawn in the manuscript and any additional data required to replicate the reported study findings in their entirety. All PLOS journals require that the minimal data set be made fully available. For more information about our data policy, please see http://journals.plos.org/plosone/s/data-availability. Upon re-submitting your revised manuscript, please upload your study’s minimal underlying data set as either Supporting Information files or to a stable, public repository and include the relevant URLs, DOIs, or accession numbers within your revised cover letter. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. Any potentially identifying patient information must be fully anonymized. Important: If there are ethical or legal restrictions to sharing your data publicly, please explain these restrictions in detail. Please see our guidelines for more information on what we consider unacceptable restrictions to publicly sharing data: http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Note that it is not acceptable for the authors to be the sole named individuals responsible for ensuring data access. We will update your Data Availability statement to reflect the information you provide in your cover letter. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Partly Reviewer #3: Yes Reviewer #4: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No Reviewer #3: Yes Reviewer #4: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This manuscript is to evaluate that THBS4 expressed in CAFs is a prognostic marker to predict poor prognosis in gastric cancer. They proved that THBS4 was expressed in stromal cells expressing alpha-SMA in gastric cancer, and positive THBS4 expression is correlated with poor prognosis of gastric cancer patients. The results are clear, but for publication in Plos One, following points should be fixed. 1. Authors determined the expression of THBS4 in gastric cancer tissues according to the intensity and the percentage of stained cancer cells and stromal cells (Page 4, Line 71). However, they said that it was only expression in stromal cells. How did authors calculate the percentage of positive THBS cells? Was the percentage meaning the ratio of positive stromal cells in all cells including cancer cells and stromal cells? 2. In figure 1, the positive staining of THBS4 look like too diffuse in the entire tissues. Can authors show the clearer photo for THBS4 staining? 3. The gastric cancer generally showed histologic heterogeneity according to the classification. In figure 1, I recommend that authors show the representative photos for THBS4 expression in two different histological subtypes (diffuse and intestinal type). 4. In figure 1, the staining photo of cytokeratin, cancer cell specific maker, should be added to support that THBS4 was not stained in cancer cells. 5. In figure 3, authors just showed the expression of THBS4 in NAF and CAF. I recommend authors that the results should be added the expression of THBS of several gastric cancer cell lines. 6. Authors described in abstract and conclusion that “THBS4 from CAFs is associated with the metastasis of cancer cells” and “THBS4 from CAFs might be associated with the invasion of cancer cells”. However, they did not show the any data for proof of concept. Authors should add the experimental data to prove them, or the descriptions in abstract and conclusion should be toned down. 7. Authors emphasized that THBS4 is especially expression on CAFs of macroscopic type-4 gastric cancer. It would be better to add the results of subgroup analysis for type-4 or other type gastric cancer. 8. Authors insisted that non-significance of stage II would be explained as recurrent pattern and adjuvant chemotherapy. To supper this hypothesis, recurrent pattern or adjuvant regimen according to the stage should be added. Reviewer #2: The authors investigated the clinicopathological significance of stromal thrombospondin-4 expression in the tumor microenvironment of gastric cancer, and found that THBS4 was expressed on CAFs. Stromal THBS4 was associated with the metastasis of cancer cells. The results are interesting and promising. However, this article suffers from several major flaws: 1. The authors used α-SMA to indicate the location of CAFs. However, α-SMA is a microfilament protein with contractile ability, mainly expressed at myoepithelial cells. Although α-SMA expression could also appear in the transformation of fibroblasts to myofibroblasts around cancer cells, the positive rate of α-SMA in CAFs is not high, and some of muscle tissues may be unexpectedly positive. I recommend the authors to add podoplanin (PDPN) in immunostaining assays, which is a widely accepted marker for CAFs with a relative high expression level. 2. Primary culture was performed to obtain CAFs and NAFs in this research. However, there was no demonstrations or photos to show the status of cells in order to verify the results. And the isolations and purifications of CAFs and NAFs were not mentioned either. 3. Inconsistent data were found between abstract and main text (e.g. positive rate of THBS4 expression). 4. For WB assay, the authors did not elucidate the sample size and necessary statistical analysis (t-test). A solitary result cannot clarify the real world. 5. According to the clinical data, THBS4 in stroma has obvious correlations with tumor invasion and lymph node metastasis. Since the primary CAFs have been cultured successfully, the authors should perform gene function experiments (e.g. migration & invasion) subsequently and explore the potential mechanisms to explain the phenomena they observed. 6. Are there any references to support the IHC evaluating method of THBS4 expression? If yes, please cite the articles, otherwise the authors should state the reason why score 3 was the watershed. 7. Terms were not used properly in this article. NAF was not common in the description of normal fibroblast. And definitions of positive and high were confused. Reviewer #3: Dear editors, In this study, the authors mainly investigated the clinicopathological value of THBS4 In gastric cancer based on the retrospective cohort from their own center. The research methods were statistical analyses of clinical data, including chi-square test, Cox proportional hazards regression models, as well as survival curves. The endpoint parameter was overall survival (OS). The article was well written, and focused on practical clinical aspects. While some problems still existed and should be improved. 1. The exact correlation of α-SMA or CAFs and THBS4 should be explained more apparently both in Introduction and Discussion. 2. The qualities of all K-M curves were poor. We believe this problem should be focused since key results of this study were reflected herein. Some normative forms could be referenced, for instance, ANNALS OF ONCOLOGY. 3. Information from Figure 3 was too simple to explain exact relation between the expression of THBS4 and α-SMA or CAFs. 4. References should be updated by using articles in recent 5 years. Reviewer #4: The authors Kuroda et.al have identified THBS4 as a marker of CAFs in gastric cancer. IHC analysis on 584 GC patients specimen shows statistical significance when THBS4 expression is compared with the clinico-pathological characteristics of the patients. However, I have some comments with respect to the methodology of CAFs and NAFs isolation for western blot analysis. The authors have not elaborated on the specific markers that were used to identify these from the samples. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No Reviewer #4: Yes: Kakoli Das [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
The Clinicopathological Significance of Thrombospondin-4 Expression in the Tumor Microenvironment of Gastric Cancer PONE-D-19-19270R1 Dear Dr. Yashiro, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Masaru Katoh, M.D., Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Authors revised manuscript according to reviewers' comments. It is acceptable to be published in PlosOne Reviewer #2: The authors answered most of the questions I raised, and modified the mistakes. I am satisfied with the revised version. Reviewer #3: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No |
| Formally Accepted |
|
PONE-D-19-19270R1 The Clinicopathological Significance of Thrombospondin-4 Expression in the Tumor Microenvironment of Gastric Cancer Dear Dr. Yashiro: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Masaru Katoh Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .