Peer Review History
| Original SubmissionMay 28, 2019 |
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PONE-D-19-15149 Horizontal seed dispersal by dung beetles reduced seed and seedling clumping, but did not increase short-term seedling establishment PLOS ONE Dear Lina Adonay Urrea Galeano, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The three reviewers agreed that the manuscript is well presented and is an important contribution to the effect of dung beetle activity on plant recruitment. However, it is necessary that the authors make the comments suggested by the reviewers for further consideration. We would appreciate receiving your revised manuscript by 22 of september. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Guillermo C. Amico Academic Editor PLOS ONE Journal Requirements: 1. When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. Thank you for stating the following in the Acknowledgments Section of your manuscript: A graduate fellowship was awarded to LAUG by CONACYT (294513). We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: EA received a research grant from Programa de Apoyo a Proyectos de Investigación e Innovación Tecnológica (PAPIIT–UNAM, project IN207816). The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Additional Editor Comments: The three reviewers agreed that the manuscript is well presented and is an important contribution to the effect of dung beetle activity on plant recruitment. However, it is necessary that the authors make the comments suggested by the reviewers for further consideration. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In their manuscript “Horizontal seed dispersal by dung beetles reduced seed and seedling clumping, but did not increase short-term seedling establishment” the authors have tested the effects of horizontal seed movement by dung beetle for two tree species. They found that dung beetle activity reduced the spatial clumping of seeds and seedlings, however, it did not increase the probability of seedling establishment. This study to help fill our knowledge gaps regarding the effects of secondary seed dispersal by dung beetles. The sample design seems adequate and robust to answer their main questions. I also like writing and organization of the manuscripts as well as concise results and discussion. I present below a list of minor comments that will hopefully aid you in improving your manuscript. I therefore really welcome this ms. L.30- In your abstract and introduction, I think it is necessary that you state more clearly your objectives, rather than “the main goal of study was to help fill this information gap “ L. 31- I recommend adding a sentence here, explained better your field experiments L. 33 - Be specific: What tree species? L. 80- I think it is necessary that you state more clearly what the unique contribution of your study is. What is your study diferente from Lawson et al. (2012)? L. 97- Add elevation of Station L. 101 - Was the experiment carried out during which season? L. 107 – 108- References for frugivores are need here, or declare if it is personal observation. L. 116 – Why did not you use a mixed of human and pig dung? L. 188 – Were the dung beetles identified using any entomological key? L. 121 - I would like to know more information about two focal tree species. Are these species dominant in the station? Why do you call these focal species? L. 106 and L 125: Alouatta palliata or Alouatta palliata mexicana? Try to use the same name. L.125 - Is Alouatta palliata Mexicana herbivorous or omnivore? L. 131 - Why as model herbivore? Is the pig dung used as omnivores? L. 131 - Why you used fresh domestic pig dung rather than of Alouatta palliata? Pigs do not form part of the local biota and are onmnivores (?) rather than frugivores. L. 137 - I would like to see a photo of experiment in supplemental material. L. 138 – Why keep the leaf litter? L.136- Were the plots of all treatments covered? L. 161- I think that you said the same information in the lines 163 and 164. L. 165 - Is the dung beetle activity went beyond the plot? Because you said that the plot with dung beetle activity was covered with netting after 48 hours. L. 215 - What is False Discovery Rate method? L. 218 - The reason for the dung beetle sampling should be in the methodology L 219 - 225 – In the results session should have the results regarding their objectives. I suggest you transfer this information on to supplementary material or add a question in your objectives. L 225 - Why did you put information on Scarabaeidae, Trogidae and Silphidae? In your introduction you state that your study is about dung beetles (scarabaeinae). L 233 – The sum of Pousenia was 99.9%. Check the values, please. L. 256, 258, 259 - Put the df L. 298 - The information “but not in accordance with our prediction” should not be in the results. L. 316 - In your introduction you describe the tunnelers: they construct tunnels in the soil beneath the dung pad for burying portions of dung. However, approximately 90% of dung beetle community of your study is tunneler beetles. How do you explain the large amount of seeds moved horizontally (97%)? L. 325 - I would like you to discuss a bit about what time would be enough. Will this depend on the plant species? Reviewer #2: Review report PONE-D-19-15149 General comments The paper covers an interesting topic and certainly fills a gap in knowledge as it is indeed assumed that dung beetles have a positive effect on seed germination and seedling survival. I am not too familiar with the most recent publications in tropical dung beetle ecology, but the paper certainly fills a gap in the current knowledge. The manuscript is well written in a clear and concise matter and the figures are clear. The used methods are correct, although I do have a suggestion for improving the statistical analysis. I am not sure whether the method is applicable on the dataset that was collected (no raw data were provided), but I’m quite certain that a survival analysis would give more insight in the establishment experiment (experiment 2). Now the authors analyzed the peak emergence data for Bursera, because a large portion of the seedlings died at a given moment. In a survival analysis, the cumulative probability of a certain event (establishment in this case) is calculated. Onofri et al. (2010) wrote a very interesting paper about using survival analysis for the analysis of the germination and emergence of seeds. There is also an R-package available on CRAN with functions for survival analyses (package ‘survival’). By conducting a survival analysis, the authors could assess the differences between treatments over the entire time series instead of using 1 single moment in a long time series. Data files are provided for all experiments and metadata are provided. However, the raw datasets are not provided, instead derived data (indices, cumulated dung beetle numbers without capture dates) are given. I don’t know the journal’s policy about data availability and the motivation for providing data, but these types of datasets are not very useful. Maybe, the results of this study could become useful in a future study doing a meta-analysis which needs raw data (e.g., real distances instead of the Clark Evans index). If the authors cannot be contacted at that time or they cannot retrieve the raw datasets anymore, sharing the datasets with this paper was not worth the effort. Also, the dung beetle dataset could provide interesting information for policy makers and conservationalists (e.g., for making red lists), so it would be useful to put it in a suitable database. For biodiversity data, the ‘Global biodiversity information facility (GBIF)’ (www.gbif.org) is the standard database. When publishing data at GBIF, you become the author of the dataset and you get a doi code. So, the dataset can be cited and you get acknowledged for your efforts. Specific comments L43: potential advantage to plants of the second phase of… -> remove ‘to plants’ as it is clear that plants are the beneficiary of the process L61: ‘sign’ sounds a bit weird -> maybe ‘nature’ or ‘(final) result’ ? L117: Which measures were taken? Which equipment was used and what was the precision of the measurements? L139: How did you decide to use 20 seeds in dung portions of 50g? How is this related to the seed density in ‘natural’ droppings found in this region? L152: seed ‘alive’: did you test the viability of the seeds? If not, intact seeds would be a better description. L159 and following: It is not clear from the text, but did you count the number of Poulsenia and Bursera seedlings originating from the soil seed bank? L229-232: this part rather belongs to the discussion section. L232: See my earlier remark. Unless you have tested the retrieved seeds for viability, you should refer to them as intact seeds. L244-246: this rather belongs to the discussion section L319-323: It seems that the presence of dung did have a greater effect on the emergence of seedlings than the presence of dung beetles. The fact that dung reduces the germinability of seeds was also found in other studies, e.g., Milotić and Hoffmann (2016). This study was done in a completely different environment and using different plant species (temperate grassland species), but I am not aware of similar studies in a tropical environment. L338: Another factor to consider is the fact that clean, undigested seeds were used in the experiments. I assume that was practically impossible to use digested seeds as you would have to feed wild animals with seeds and collect the dung afterwards (furthermore, the issue would arise about which species should be used as a ‘digester’ species), but it is worthwhile mentioning this in the discussion. In the natural situation, seeds that passed the gut environment of a frugivore might have an altered germination probability and speed. So, maybe the presence of dung would not be that much of a problem then. L350 and following: did you test the viability of the seeds prior to the experiments? It could also be that a relatively large proportion of the seeds is dead or dormant. Is there anything known about the germination ecology of these species (e.g., in Baskin and Baskin (2001))? L393: What is the usual fruiting season for these species or do they carry fruits year-round? Fig S3: For Bursera, the mean nearest neighbor distance in the +feces+beetles treatment increases over time. Do you have any idea why? References Baskin C.C., Baskin J.M. (2001) Seeds: ecology, biogeography and evolution of dormancy and germination. Academic Press, San Diego. Milotić, T., & Hoffmann, M. (2016). Reduced germination success of temperate grassland seeds sown in dung: consequences for post‐dispersal seed fate. Plant Biology, 18(6), 1038-1047. Onofri A., Gresta F., Tei F. (2010) A new method for the analysis of germination and emergence data of weed species. Weed Research, 50, 187–198. Reviewer #3: The manuscript is very well written and brings an important contribution to our understanding of the effect of dung beetle activity of plant recruitment. All sections of the manuscript are very clear and easy to read. I have no major concerns and only did some minor comments here below. Congratulations to the authors. That was a real pleasure to read this manuscript. L63: Please change “de” into “the” before “probability” Experiments 1 and 2: Could you provide some information about the fruiting period of the two plant species of the experiments? Were both species present long fruiting period since you could set up experiment 2 three and five months later experiment 1 or did you collect and then freeze the seeds? In addition, could you add some information about rainfall during experiment 1 and 2? Did you expect variation in the dung beetle activity between these two experiments because of the different time of the year? L201-202: The proportion of seedling establishment is a continuous variable, right? Why is a binomial structure used in this case? L561: Legend of Figure S1: “…in 50-cm-diam plots…” L582: “…50g of feces and beetle…” L302: “…the results were similar…” (not “where”) L303: Maybe you can add that you obtained the same pattern of higher seedling establishment of Poulsenia with no feces. L384: I think it would also be relevant to add that future studies should try to set experiments enabling the disentanglement of the effect of seed burial and clustering (e.g: experiments comparing the seedling establishment of seeds at a same burial depth but at different spatial clustering). L394-397: This sentence is not very clear. In the second part of the sentence “…possibly due to seed burial”, it is expected you give an explanation on why Poulsenia seeds present negative effects when embedded in dung, but the sentence is confused and you repeated that it is because they are embedded in dung. Laurence Culot ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Tanja Milotic Reviewer #3: Yes: Laurence Culot [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-19-15149R1 Horizontal seed dispersal by dung beetles reduced seed and seedling clumping, but did not increase short-term seedling establishment PLOS ONE Dear Dra. Lina Adonay Urrea Galeano, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The reviewers coincide that comments have been addressed and manuscript has improved considerably. However, there are some minors concerns (see Reviewer #3) the authors should address. We would appreciate receiving your revised manuscript by October 18. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Guillermo C. Amico Academic Editor PLOS ONE Additional Editor Comments (if provided): The reviewers coincide that comments have been addressed and manuscript has improved considerably. However, there are some minors concerns that the authors should address. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: This revised version of the manuscript has improved considerably. The methods are written down in a way it is possible to reproduce the experiment, and I really appreciate the pictures that are included as an appendix. The whole text is well written, and the images are clear. All suggestions and corrections I proposed were addressed properly, and questions were answered. After carefully reading the manuscript, inspecting the graphs and appendices, no new issues raised, so I would advise to publish this paper. Reviewer #3: You responded satisfactorily to most of my comments and I think that the manuscript has been well improved. I still think that you can expect a different secondary seed dispersal activity between seasons, and therefore between the experiment 1 and 2. You may have a low proportion of rollers, but the tunnelers also influence the burial depth, which consequently can affect the probability of seedling emergence. This difference does not discredit your work, but I think that a mention of this possible bias should be mentioned in the discussion. Please find a few minor comments based on the reading of this new version of the manuscript: L197-198: What do you mean by “conservative” in this case. The restricted area of your experiments can bias the results towards an underestimation of the horizontal distances. Is it what you mean? If so, I suggest to rephrase. If not, please clarify or delete the sentence and keep this information for the discussion. L205: I suggest writing “one of the driest month” L2016: I suggest writing “the beginning of the rainy season” ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Tanja Milotic Reviewer #3: Yes: Laurence Culot [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Horizontal seed dispersal by dung beetles reduced seed and seedling clumping, but did not increase short-term seedling establishment PONE-D-19-15149R2 Dear Dra. Lina Adonay Urrea Galeano, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Guillermo C. Amico Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-19-15149R2 Horizontal seed dispersal by dung beetles reduced seed and seedling clumping, but did not increase short-term seedling establishment Dear Dr. Urrea Galeano: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Guillermo C. Amico Academic Editor PLOS ONE |
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