Peer Review History
| Original SubmissionJune 17, 2019 |
|---|
|
PONE-D-19-17091 Factors influencing subclinical atherosclerosis in patients with biopsy-proven nonalcoholic fatty liver disease PLOS ONE Dear Dr. Atsukawa, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We would appreciate receiving your revised manuscript by Oct 05 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Jee-Fu Huang, M.D., Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 1. Please amend your authorship list in your manuscript file to include author Norio Iwashita 2. Please amend the manuscript submission data (via Edit Submission) to include author Norio Itokawa [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Arai T et al evaluated the factors influencing atherosclerosis in patients with biopsy-proven nonalcoholic fatty liver disease (NAFLD), and found advavalunced liver fibrosis was associated with arterial stiffness. The study is interesting, however, some issues need to be addressed. Abstract: 1. Line 42-43: Please show the value of 95% CI. 2. Line 48: Please show the value of p. Methods: 1. Line 119-123: Hyaluronic acid [28], type IV 120 collagen 7s domain [29, 30], and Wisteria floribunda agglutinin positive Mac-2-binding protein (WFA+-M2B) [30–32], all of which have been reported as useful liver fibrosis markers in NAFLD, were measured. In addition, the fibrosis scores such as the FIB-4 index [33] and NAFLD fibrosis scorer (NFS) [34] were calculated, as reported previously.--> please change to Hyaluronic acid [28], type IV collagen 7s domain [29, 30], Wisteria floribunda agglutinin positive Mac-2-binding protein (WFA+-M2B) [30–32], FIB-4 index [33] and NAFLD fibrosis scorer (NFS) were measured. It is not suitable to write comments in the Methods. Results: 1. How about NFS score in analysis, including Table 1, Table 2 and Figure 1? 2. In this study, baPWV was used without considering ABI values. It has been widely recognized that baPWV value is meaning less to measure in the limb of ABI value <0.9. How are the results if you exclude baPWV data associated with ABI <0.9? Addition, how about the association between ABI and liver fibrosis stage? 3. Line 280-281: This paradox can be explained by the loss of hepatic fat in NAFLD patients with advanced fibrosis. This result may suggest that liver fibrosis affects the arterial stiffness more than the hepatic fat. This explanation is too simple to convince others. 4. Line 323: based on noninvasive fibrosis markers and scores may predict the risk of arteriosclerosis� please change to arterial stiffness. After all, the two nouns are different. Reviewer #2: This is a well conducted study examining the association of the severity of NAFLD and subclinical atherosclerosis in 153 biops-proven NAFLD patients. The findings are interesting and important, while some points need to be further clarified. 1. Patients who underwent histological evaluation were eligible and included in this study. However, the reasons for histological evaluation are unclear. The authors need to show the reasons for histological examination of the study subjects. 2. This study shows an association between liver fibrosis and subclinical atherosclerosis, but not a causal association. Therefore, the statement "...liver fibrosis affects the arterial stiffness...." is incorrect. 3. The results in paragraphs "Prevalence of baPWV ≥1600 cm/s according to the clinical risk scores based on older age, hypertension, and advanced fibrosis diagnosed by liver biopsy" and "Prevalence of baPWV ≥1600 cm/s according to the clinical risk scores based on older age, hypertension, and advanced fibrosis as diagnosed by fibrosis markers and scores" are redudant and may be removed. Moreover, the authors need to exaplain why they chose a cut-off level of baPWV as 1600 cm/s. 4. What kinds of drugs that may induce fatty liver were examined and excluded in this study? 5. The authors need to exaplain why this study could not show the associations of metabolic factors/ and related disorders (sucah as daibetes mellitus and hyperlipidemia...) with liver fibrosis. Reviewer #3: PONE-D-19-17091 Taeang Arai et al., Factors influencing subclinical atherosclerosis in patients with biopsy-proven nonalcoholic fatty liver disease This study aimed to clarify the factors related to subclinical arteriosclerosis, including the histopathological severity of the disease and PNPLA3 gene 38 polymorphisms, in 153 biopsy-proven nonalcoholic fatty liver disease (NAFLD) patients. The authors found that older age (≥55 years), hypertension, and advanced fibrosis were independently linked to baPWV ≥1600 cm/s. The study is appropriately designed and executed. However, there are some concerns to be clarified: 1. The association between subclinical atherosclerosis and NAFLD, indeed, has been studied extensively in the past. Retrospective and prospective studies have provided evidences of a strong association between NAFLD and subclinical atherosclerosis, including increased intima-media thickness, endothelial dysfunction, arterial stiffness, impaired left ventricular function and coronary calcification. (Fargion S et al., World J Gastroenterol 2014;20:13306-24.). The relevant meta-analysis has also been published (Ampuero J et al., Rev Esp Enferm Dig;107:10-6.). A recent study has also addressed this issue (Gill C et al., Am J Cardiol 2017;119:1717-22.). 2. Also, the progression of histological liver fibrosis as an independent factor for a high PWV value in a study involving 100 biopsy-confirmed 276 NAFLD patients has been reported [Ref. 13 of the manuscript]. The authors also mentioned that the only difference of their study as compared with the previous studies is that theirs is a “relatively large Japanese cohort” (Line 1, Page 17, the manuscript), which made this study not novel enough. 3. Figure 1 shows that no correlation with baPWV was noted for histological findings of liver inflammation and ballooning. Multiple logistic regression analysis showed that the following the only histological variable independently linked to baPWV ≥1600 cm/s (Table 2) was advanced fibrosis. This raises the concern if baPWV is actually related only to liver fibrosis, but not necessary to steatosis (inflammation and ballooning). The previous study has indicated that the carotid intima thickness, a parameter of subclinical atherosclerosis, significantly increased in chronic hepatitis C virus patients especially in those with cirrhosis and closely correlated with each other (Barakat AAE et al., Egypt Heart J 2017;69:139-47.). 4. As discussed in the Paragraph 2, Discussion of the manuscript, the arterial stiffness-promoting mechanism of the presence and severity of NAFLD independent of conventional metabolic risk factors remains unclear. To strengthen the novelty of this study, the levels of parameters of chronic inflammation, oxidative stress, adiponectin and TGF-β can be checked. 5. Although single nucleotide polymorphisms (SNPs) in the patatin-like phospholipase domain containing 3 gene (PNPLA3) are associated with the development and severity of NAFLD [Ref. 16–18 of the manuscript], this study only mentioned the distribution of the PNPLA3 polymorphisms without showing the association among PNPLA3 polymorphisms and severity of NAFLD. 6. It would be interesting to have sub-group analyses to search for any further possible correlations. For instance, although the current study did not identify an association between baPWV and the PNPLA3 SNP genotype, sub-group analyses according to gender or age may exert different findings. [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
Factors influencing subclinical atherosclerosis in patients with biopsy-proven nonalcoholic fatty liver disease PONE-D-19-17091R1 Dear Dr. Atsukawa, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Jee-Fu Huang, M.D., Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Partly ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors had addressed all issues well. I think the manuscripts get better after the revise. Thank you for the efforts of the authors. Reviewer #2: The authors have satisfactorily responded to all my questions and made the necessary changes to the revised manuscript. Reviewer #3: The previously raised issues have been addressed by the authors appropriately and I have no further comments. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No |
| Formally Accepted |
|
PONE-D-19-17091R1 Factors influencing subclinical atherosclerosis in patients with biopsy-proven nonalcoholic fatty liver disease Dear Dr. Atsukawa: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Jee-Fu Huang Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .