Peer Review History
| Original SubmissionOctober 3, 2019 |
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PONE-D-19-27691 Spatial variability in pollen and resource limitation for fruit production of two species in Interior Alaska: Vaccinium uliginosum and V. vitis-idaea PLOS ONE Dear Dr Parkinson, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. In general, the two reviewers considered your manuscript a useful and scientifically sound contribution to the topic, however there are some issues that have to be addressed in a revised version. Both reviewers found that some important references were missing. This refers to the assumptions and hypotheses underlying your study, but also to the species’ reproductive biology and to pollen limitation at high latitudes in general. Some other issues that require more attention are the role that vegetation cover and light availability may indirectly play for seed set via their effects on pollinator activity and the role of pollen “quality” limitation caused by self-incompatibility and extensive clonal spread. The reviewers also raised a range of questions regarding the methods used. Among others, I recommend clarifying what you considered a ramet and why you used a different radius for the two species to count floral resources, adding some more information about soil nutrient availability of sites (e.g. leaf nutrient concentrations) if possible, and improving the assignment of sites to the groups, in particular of the two rather intermediate sites. The reviewers also recommended some adjustments of statistical methods, e.g. using multilevel modeling because of the nested data structure, and adding some missing but important relationships to the SEMs. Furthermore, I recommend considering the further, detailed comments provided by the two reviewers, including suggestions how to improve writing, formatting and figures. We would appreciate receiving your revised manuscript by Feb 04 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
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If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. The following resources for replacing copyrighted map figures may be helpful: USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/ The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/ Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/ Landsat: http://landsat.visibleearth.nasa.gov/ USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/# Natural Earth (public domain): http://www.naturalearthdata.com/ [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In the study, the relative effects of light (canopy cover), nutrient resources (depth of the active layer and soil moisture), and pollen availability (pollen load) were assessed on flower and berry production in the boreal forest around Interior Alaska. The study is a useful contribution, and a great effort was given to study a complex system of factors affecting on berry plants. The use of structural equation model (SEM) is well justified to analyse relationships among unobserved concepts using the above mentioned variables observed. Data collected in a single year only is understandable (due to high work load in the field and lab) and is not limiting the value of the study. I have comments, some of which may be regarded as pointing some shortcomings. 1. In Introduction, the authors present several assumptions without any references (“we expect”, “may “be, “may affect”, etc.). I suggest that you try to find references to support your expectations/assumptions, and separate your hypotheses from the results published in literature. For example, Finnish studies by Anne Tolvanen and Jussi Kuusipalo (1988, Vegetation 76: canopy cover and fruiting of bilberry) may support some of your speculations and results. 2. According to the caption of Fig. 3, the size of the site seems to be 50 m x 60 m. This should be mention already in Methods. 3. In Methods (and Abstract), please mention as early as possible that the measurements took place in a single growing season in 2017. 4. You assessed flowers of other species flowering at the same time as Vaccinium species studied. What about species flowering earlier in the spring, and thus luring and sustaining pollinators at the site. Should you assess these species, especially willows as well? 5. Any reason to count total floral resources using different radius for blueberry (1 m) and lingonberry (0.5 m)? 6. In PCA, you could calculate and present Cronbach’s alpha if variable deleted to explore the internal consistency of the variables included in PC analysis. 7. Please use consistently “Age” or “Time since fire”. In Table 1, you use Age, and in Fig. 3, Time since fire. 8. “Canopy cover explained more than twice as much of the change in allocation to leaves in lingonberry as it did in blueberry (R2 =0.24 vs. R2 =0.10).” I am not sure if you can compare two R2 values obtained for two different data sets. 9. I guess simple linear regression models (no equations were presented) were fitted to explain the biomass ratios as a function of canopy cover. You have a hierarchical data structure; ramets within sites? Therefore, you should use a multi-level modelling in fitting the regression equations. 10. The number of observations is missing in Tables 4 and 5. In Fig 7, the number of observations is 15. Why? The number of sites was 17. 11. The authors discuss on possible impacts of the expected changes in boreal forest fire regime, vegetation composition and soils on berry productivity. I am not aware of forest management in Alaska. If managed, then the effect of forest management (affecting the canopy cover) on berry production should also be discussed. Reviewer #2: Journal: PLoS ONE Manuscript ID: PONE-D-19-27691 Title: Spatial variability in pollen and resource limitation for fruit production of two species in Interior Alaska: Vaccinium uliginosum and V. vitis-idaea Comments to the Editor and Authors General: This study explores how site variation relates to flower and fruit production in two species of Vaccinium in Alaska. Specifically the study tests predictions of patterns in abiotic resource and pollen limitation in fruit production related to time since last fire, total local floral resources, and differences in the two species’ life histories. The primary results are analyzed using structural equation modeling that offer insights into direct and indirect effects on flower and fruit production and differences between upland and lowland habitats. Overall the results are in accordance with expectations, although the authors found evidence for total floral resources affecting pollen loads or the number of berries in only one of four contexts. In general, the underlying questions are of ecological interest, the methods and the analyses appear sound to my knowledge (though I have one or two questions), and the interpretation of results is appropriate. The grounding of research in fruit limitation research could be strengthened. The writing, formatting, and figures could be substantially improved. Overall, I believe it is a fine study and sufficient manuscript to warrant publication with some improvements and questions addressed. I provide some general statements and questions followed by specific edits/suggestions below. I recommend the authors develop a stronger foundation of the study species’ reproductive biology and pollen limitation on fruit production in high latitude contexts. Interpretation of their results would be improved information by providing context to highly relevant studies that are not referenced – e.g., Jacquemart & Thompson 1996; Jacquemart 1997; Brown & McNeil 2009, a number of Totland’s papers; Fulkerson et al. 2012; Urbanowicz et al. 2018. For example, V. uliginosum is self-compatible where it has been studied, but does not auto-pollinate in the absence of visitors. Often open pollination treatments result in equivalent proportions of fruit set (but not seed set) as supplemental hand pollinations. Pollen limitation and resource limitation of reproduction are typically measured as a proportion of fruits to flowers or seeds to flowers (or ovules) under experimentally enhanced and control conditions - there is a value in the sense that the authors use the terms and by using the natural environmental variation, but referencing the distinction would be useful. I would recommend that the authors acknowledge pollen limitation may be a function of both pollen quantity and pollen “quality” (i.e., amount of outcrossed pollen). Pollen quality limitation can be an issue especially for highly clonal plants even with relatively abundant pollinators. Vaccinium vitis-idaea is self-incompatible and therefore more likely to be subject to geitonogamous pollinations that don’t result in fruits or seeds. While I concur with the general relationship between active layer depth, soil moisture, and nutrient availability, however that relationship is noisy and can be variable within sites. Thus we are presented with a proxy for soil nutrient availability with unclear relationship to what the plants actually have access to. The authors recognize this and briefly discuss it in the Methods, which is appropriate. If tissue from the ramets has been retained following the biomass measurements, could leaf N content or concentration at least be measured at least? Has anyone else measured soil N and P at these LTER sites? Obviously it is too late in the year to get soil samples now. Some more description of what the authors consider a ramet for both of these species would be warranted in the Methods, as what constitutes the “ground” in boreal forests with deep layers of loose organic layers or moss can be ambiguous, especially coupled with the extensive branching of these species low to the ground. It should be stated in the pollen availability section that the authors were only counting conspecific tetras or no heterospecific tetrads were observed. The authors should note throughout the manuscript that canopy cover/light availability not only may affect flower and fruit production through physiological factors, but also due to increased pollinator activity – there should be plenty of references of that in the literature. It would make more sense in my mind to drop the two sites (GSM4 and BFY6) that were intermediate in environmental characteristics as described by the PCA rather than assigning them a lowland category. Or I suppose a hierarchical cluster analysis or another analysis that assigns groups could be a more defensible approach for determining where the two sites should go. The SEM has some relationships that seem to me to be lacking and potentially important. Why would there not be estimation of the effect of # Flowers on Pollen Load? Only Total Floral Resources on Pollen Load? It is likely of much less importance how many Rhododendron and other flowers are present on pollen loads than number of Vaccinium flowers. What about the relationship between canopy cover and total floral resources? There are a lot of SEM figures and the first model could be included as a figure only in the supplemental figures section. Removing it from the primary manuscript would improve the clarity of the message. There are some sections of the manuscript that read smoothly and the overall architecture of paragraph succession is logical, but much of it is packed with unnecessary parenthetical clauses, missing punctuation, sentences that could be improved for clarity, and poor overall formatting. I would encourage the authors to spend a bit more time and carefully craft the language and formatting. I will include a few suggestions below in the specific section, but the number of edits would be too lengthy to include all corrections or suggestions. ______________________ I appreciate the opportunity to read this paper and I sincerely hope that my comments are useful in generating a more robust manuscript. As with all papers I am asked to review, I strive to provide honest, thorough, and fair reviews, I therefore do not have cause to maintain anonymity. -Matthew L. Carlson Specific: Figure 1: I would remove this figure. You include a supplemental table that could include latitude longitudes as well. If you do feel it is necessary it could use some cartographic/design attention (both the inset and the primary maps are very difficult to discern features and the figure legend does not do an adequate job of explaining what the reader is looking at. Figure 4: Please remove the raw data points. The inclusion of the points makes the figures unnecessarily busy and distracting. It is not clear from the axis label or legend what “Pollen Load” is (pollen grains/stigma or pollen tetrads/stigma… not pollen grains/ramet as suggested by the legend?). Also I would suggest the y-axis label of # Berries, say Berries per ramet. Title: “Spatial variability…” is misleading since there is a whole subdiscipline of ecology that explores spatial patterns and variability and this study does not explicitly address space. Something along the lines of: “Patterns of pollen and resource limitation of fruit production in Vaccinium uliginosum and V. vitis-idaea in interior Alaska” or try and squeeze in some primary variables: “Pollen and resource limitation of fruit production in Vaccinium uliginosum and V. vitis-idaea in interior Alaska: effects of landscape position, stand age, and canopy cover on reproduction” Abstract: Looks okay other than far too many parentheses and in the last sentence it is really pollination service or pollinator service, not the raw abundance of pollinators that is important in fruit production. Introduction: Paragraph 1 - Missing a period in the first sentence. Avoid the long list of common names – the single more often used one would be appropriate. “Ursus spp.” should be “Ursus spp.” or just say Ursus arctos and U. americanus. There are only two after all. Branta hutchinsii reference to Hupp’s paper – those are a more coastal – nesting species that I believe he was emphasizing feed on Empetrum. Maybe I’m wrong and he did talk about them feeding on Vaccinium. Paragraph 2 – “…pollinator availability” I would recommend changing to “pollinator service (limiting pollen compatible deposition and subsequent fertilization)” I would strike (i.e. where on the landscape we would expect changes in berry production) “…growth and fruit availability are not always correlated” I would say “… growth, fruit, and seed production are not always correlated with one another [21].” “Fruit production in all plants…” should read “Fruit production in all flowering plants…” Avoid the word “pulses” in this context. How about “factors”? I suggest making the last sentence first person “Here we focus on resource…” Paragraphs 3 & 4 – Minor errors that need attention (South-facing aspect), space after a comma in citations, remove parenthetical clause about low shrubs. Paragraph 5 – Strike the first sentence and lead with the second sentence I like the foundation developed in that paragraph. Paragraph 6 – Second sentence – avoid the use of “so” and replace with “and many plants” (remove flowers there). Third sentence – no italics for family names (Syrphidae). Andrena is misspelled and I don’t wonder if more of the long-tongued solitary bee genera would be more likely Vaccinium pollinators (like Osmia spp., Megachile spp., or Anthophora)? Paragraph 8 – The authors should really just stick to canopy cover, active layer depth, soil moisture, and conspecific pollen loads in the first sentence. Perhaps a second sentence to draw the reader to those measures as estimates of the unmeasured factors (?). I like the signpost paragraph and the predictions. Specify that by pollen load you mean conspecific pollen. Methods: Correct italicized parentheses. Remove Figure 1. Describe what constitutes a ramet In Statistical Analyses section: correct the last sentence of the first paragraph. It would be “Values for the first two PCA axes…” not “both PCA axes” as there would be n – 1 axes in PCA analysis. Correct font in the second paragraph in that section. Include “Stand Age” in Table 1 and elsewhere. Throughout the manuscript statistical symbols should be italicized. Spaces should be placed on either side of “ = “ signs, etc. Results: SEM model fit section – first sentence is unclear. Do you mean to say all the “sites” included rather than “ramets”? Later on the SEMs are separated by sites. It is not very clear that each species was being treated separately. The second clause of that sentence if very difficult to interpret. I would suggest something like “… fit poorly as measured by three standard model fit metrics (…” Limitations for flower and fruit production: canopy cover section – I would suggest striking “…and environment” in 3rd sentence. Direct and indirect effects section – I would avoid the use of the pronoun “it” in the second sentence. Table 2 and 3 legends. Please write out what “TFR” stands for. Table 4 and 5 legends. Please include what statistic is being reported (correlation coefficient/Pearson’s r presumably). Discussion: First sentence – I would recommend striking “in this research” as it is implied and not necessary. Pollen limitation section – I partially disagree with the second sentence. While blueberry is self-compatible it is protandrous and sets basically no fruit in the absence of pollinators (various studies). Resource limitation section – Don’t forget that bees and many other pollinators have much lower abundance and activity levels in the canopy, for example in our Alaska bee biodiversity surveys we are catching 22 x the number of bees in open habitats relative to adjacent boreal forest – and there should be numerous studies showing this pattern outside of Alaska. 6th paragraph first sentence is incomplete. Study limitations sections – good points in the first two paragraphs ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Matthew L. 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| Revision 1 |
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Patterns of pollen and resource limitation of fruit production in Vaccinium uliginosum and V. vitis-idaea in Interior Alaska PONE-D-19-27691R1 Dear Dr. Parkinson, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Harald Auge Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have addressed the comments on the previous version of the manuscript so that this manuscript is now acceptable for publication. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No |
| Formally Accepted |
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PONE-D-19-27691R1 Patterns of pollen and resource limitation of fruit production in Vaccinium uliginosum and V. vitis-idaea in Interior Alaska Dear Dr. Parkinson: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Harald Auge Academic Editor PLOS ONE |
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