Peer Review History
| Original SubmissionJune 12, 2019 |
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PONE-D-19-16643 Analysis of the protein composition of the spindle pole body during sporulation in Ashbya gossypii PLOS ONE Dear PD Dr. Schmitz, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. I will invite you to answer all the comments raised by both reviewers You will need to specifically clarify all the major points raised by the reviewer 1 - regarding the FRET measurements : GFP and RFP, CFP and YFP. - the self interaction of inactive Bnr2. - regarding the gowth of strains. Data must be presented identically to allow comparison. - answer the questions regarding line 321-323 and line 325-327 You will also have to give provide more details (for non-experts) on the defects seen in the Agmpc54∆ and Agady4∆ mutants (see reviewer 2) Also, please complete the Method section as requested by both reviewers. We would appreciate receiving your revised manuscript by Sep 02 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Claude Prigent Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 1. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript of Wabner et al “Analysis of the protein composition of the spindle pole body (SPB) during sporulation in Ashbya gossypii” deals with the formation of spores in Ashbya gossioii and the importance of certain spindle pole proteins during sporulation. Previous work showed that the formin Bnr2 is important for spore formation, is located at the spindle pole body and interacts with some of the spindle pole body components. In this follow up investigation, the protein-protein interactions at the spindle pole body were investigated by fluorescence resonance energy transfer (FRET). Furthermore, sporulation tests were done with some of the SPB components. The manuscript touches a very interesting topic, organization of the microtubule-organizing center during growth and sporulation. Especially, the changes associated with the different phases at the SPB, going from microtubule-organizing to actin-filament organizing deserve thorough investigation. Unfortunately, the manuscript in its current form contains some inconsistencies concerning data and the text, therefore it is premature to publish it. My main points are: -line 232-237: in Kemper et al. the FRET is described between GFP and RFP, CFP and YFP are mentioned only in the methods section. This is rather confusing and does not help very much in the discussion of why there are differences between the FRET measurements. I suggest the authors repeat the measurements with the original strains and their current analysis setup and include the data for comparison here, also because in the former publication no images of the FRET analysis were shown. -line 240-250: initially, CBnr2R was categorized in the non-FRET group with frequently FRET positive signals. In the last sentence of the section, a positive FRET is claimed for the inactive form of CBnr2R, exactly as observed? Due to the high signal variation, this seems to be an over-interpretation of the data. Clearly more work is necessary to show clearly that Bnr2 shows self-interactions in its inactive form. -line 261-263: very confusing statements: both grow similar or one faster than wt? in the Figure, the left strain seems to grow faster, however this one contains Spo74. Also figure 4b shows images and 4c the growth curves. -line 321-323: if the authors do not fully trust the Y2H measurements of Kemper et al, why are these same Y2H interactions the main reason for the placement of the N-terminus of Bnr2 towards the IL1 in the model of figure 7? Maybe some more FRET measurements with N-terminal fusions are necessary to clarify this point and to have more support for the model. -line 325-327: in the citation Kemper et al., I could only find the usage of RFP and GFP for FRET measurements and only the interaction between Bnr2 and Cnm67 was tested by FRET. FRET data of Bnr2 with spo21 I could not find. Moreover, the FRET data of Kemper et al between Cnm67 and the C-terminus of Bnr2 contradicts the model in figure 7, that shows a placement of the C-terminus of Bnr2 that should not result in a FRET signal together with Cnm67. -line 364-351: too much speculation, see also the comment on Cnm67 FRET results. Minor points: -the FRET measurements have to be described in more detail. There are several crucial information that the reader is supposed to look after in diverse publications. These should be presented in the methods section as well as a good description of the adaptations that have been performed to the FRETSCAL algorithm. This will be important for everybody doing similar measurements in other fungi. - line 218-222: is there an estimation of how much of a mycelium was producing spores at a later time point? This information might be helpful to interpret the FRET data. Reviewer #2: This study from Wabner et al expands on earlier studies from the Schmitz group demonstrating the importance of the actin cytoskeleton for formation of the complex needle-shaped spores in A. gossypii and showing that the actin-nucleating formin AgBnr2 localizes to the spindle pole body during sporulation. In this study, FRET interactions between AgBnr2 and different SPB proteins are used to show that AgBnr2 is located close to the sporulation outer plaque (SOP) protein AgSpo74. Consistent with this, deletion of AgSPO74 greatly reduces recruitment of AgBnr2 to the SOP. The presence of AgBnr2 in the SOP is in contrast to the homologous structure in S. cerevisiae, the meiotic outer plaque (MOP). Strengthening the contrast with S. cerevisiae, the authors delete the Ashbya orthologs of three MOP components important for sporulation in S. cerevisiae find that while AgSPO74 is essential for spore formation, AgMPC54 an AgADY4 are not. Specific comments: For the non-expert it would be helpful to more fully explain the defects in actin and/or chitin distribution seen in the spores of the Agmpc54∆ and Agady4∆ mutants. As only one cell is shown, it is not so clear how the mutants are abnormal. For Agmpc54∆, the authors state that similar defects were seen in mutants of rho1 and other actin-associated genes. I assume this refers to the elongated spore phenotype and not necessarily the effects on the distribution of actin, chitin, etc.? It appears in the earlier paper that not all of the mutations that caused lengthening of the spores produced the same effects on chitin distribution. Does Agmpc54∆ resemble a specific mutant? This discussion should be clarified. I may be overlooking it, but I do not see in the Methods a description of how the CFW/DiOC6/Eosin Y stainings were performed. As part of their data collection for the FRET measurements, the authors should have generated measurements of the fluorescence intensity of mRuby fusions to multiple different SPB components. These values could be used to determine the relative stoichiometries of the different components. It would be of interest to compare these values to stoichiometries reported for the S. cerevisiae SPB. Based on the studies in S. cerevisiae, where loss of either SPO74 or SPO21 causes complete absence of the MOP, it is surprising that AgSPO74 is important for AgBnr2 recruitment to the SOP but that AgSPO21 is not (the latter result is reported in an earlier paper from the Schmitz lab). It would be nice to revisit this second result here, but at a minimum this difference should be discussed. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Christof Taxis Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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[EXSCINDED] PONE-D-19-16643R1 Analysis of the protein composition of the spindle pole body during sporulation in Ashbya gossypii PLOS ONE Dear PD Dr. Schmitz, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the two minor points raised during the review process. --Line 265-266: Figure 4A shows statistics, Figure 4B the images, the text is not correct here. - Line 366: "...actin does not seem to play a role in this yeast." Please provide a reference for this statement. We would appreciate receiving your revised manuscript by Oct 25 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Claude Prigent Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: My comments to the manuscript have been almost addressed, only two minor things remain: -Line 265-266: Figure 4A shows statistics, Figure 4B the images, the text is not correct here. line 366: "...actin does not seem to play a tole in theis yeast." Please provide a reference for this statement. Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Christof Taxis Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Analysis of the protein composition of the spindle pole body during sporulation in Ashbya gossypii PONE-D-19-16643R2 Dear Dr. Schmitz, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Claude Prigent Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-19-16643R2 Analysis of the protein composition of the spindle pole body during sporulation in Ashbya gossypii Dear Dr. Schmitz: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Claude Prigent Academic Editor PLOS ONE |
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