Peer Review History
| Original SubmissionJune 10, 2019 |
|---|
|
PONE-D-19-15961 Risk of Major Autoimmune Diseases in Patients with Female Breast Cancer: a Nationwide, Population-based Cohort Study. PLOS ONE Dear Dr. Chien-Chih Chen, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. As you can see in the comments, both reviewers concluded that the basic data deserves to be published if certain changes, corrections and specifications have been made. In addition, both reviewers pay attention to partly erroneous or awkward usage of English language and medical expressions. I agree with the comments and strongly encourage you to improve the text by proficient language editing and to carefully respond to the detailed comments of Reviewer 2. We would appreciate receiving your revised manuscript by September 7, 2019. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Pirkko L. Härkönen, M.D., Ph.D. Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. We suggest you thoroughly copyedit your manuscript for language usage, spelling, and grammar. If you do not know anyone who can help you do this, you may wish to consider employing a professional scientific editing service. Whilst you may use any professional scientific editing service of your choice, PLOS has partnered with both American Journal Experts (AJE) and Editage to provide discounted services to PLOS authors. Both organizations have experience helping authors meet PLOS guidelines and can provide language editing, translation, manuscript formatting, and figure formatting to ensure your manuscript meets our submission guidelines. To take advantage of our partnership with AJE, visit the AJE website (http://learn.aje.com/plos/) for a 15% discount off AJE services. To take advantage of our partnership with Editage, visit the Editage website (www.editage.com) and enter referral code PLOSEDIT for a 15% discount off Editage services. If the PLOS editorial team finds any language issues in text that either AJE or Editage has edited, the service provider will re-edit the text for free. Upon resubmission, please provide the following: • The name of the colleague or the details of the professional service that edited your manuscript • A copy of your manuscript showing your changes by either highlighting them or using track changes (uploaded as a *supporting information* file) • A clean copy of the edited manuscript (uploaded as the new *manuscript* file) 3. Thank you for stating the following in the Acknowledgments Section of your manuscript: "This study was supported by Taichung Veterans General Hospital." We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: "No" [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This study makes use of the large Taiwanese National Health Insurance Research Database (NHIRD) to compare the incidence rates of autoimmune diseases in breast patients and propensity score matched non-breast cancer individuals. The study design is well powered, data analysis is clean, and results are unambiguous. I only have some minor comments— 1) In title the expression “in patients with female breast cancer” is awkward. Please consider rephrase it, for example, as “in female patients with breast cancer”? 2) There is a typo in Abstract “1:4” instead of “1:40”. Reviewer #2: General comments The idea is novel, and inspired by very up-to-date science: the importance of immune responses in breast cancer. In the US, there about 300 clinical studies registered on this issue. This study illustrates the potential for immunotherapy. The paper needs English editing to give an impression of serious science. Too many typing errors that I can correct them all. I also think many sentences can be written better, for example, I think this heading is better “Risk of Major Autoimmune Diseases in female breast Cancer: a Population-based Cohort Study”. First sentence in the abstract “Breast cancer is one of common malignancy among women” illustrates the low level of proficiency in English. Method: The method needs to be better described and justified. Why not using all the data in NHRID? Then they need not to match and later adjust for covariates. This is a case-control cohort study. Breast cancers are recorded during 2007-13, while non-breast cancer patients are recorded during the period 2003-2013. This can make problems, I think. If not, please explain. Why not use all the population in NHRID, split them in breast cancer patients and not breast cancer patients at start, and then follow them up until disease (and censor them). Then you have a prospective cohort study, and less variables to adjust for. The potential risk of biased outcome/false positive reporting in this study is related to the adjustment. In Table 2, I would like to see estimates before adjustment of adjuvant therapy. Adjustment for CIC and adjuvant therapy may generate over-adjustment. You adjust for the same disease twice, unless you think that adjuvant therapy directly influence on the risk of autoimmune disease. Minor comments Abstract, Method: the ratio is 1:4, I think. You are not matching on sex, I think. You are excluding males. Page numbers are missing. Would be fine with line numbers too. Introduction, second sentence. Delete “prevalence”. Only focus on incidence, because women live longer than men do. Thus, comparing prevalence rates is not meaningful. Last sentence, last paragraph, introduction (especially 6th last line): bad English, too long sentence. Furthermore, the aim/hypothesis to study has already been presented in the previous paragraph. Data source, first paragraph, forth sentence: The word “claims” is not necessary. Sufficient to write “… comprehensive data regarding…” Last sentence: “provides data” and not “databases” to researchers. I think “catastrophic illness” is not the proper word to use. “Possible fatal illness”, is probably better. Definition of female breast cancer patients: CIC is not defined. And not MAD either, in the next paragraph. Potential confounders: gender??? I suggest excluding all male breast cancer patients from start and only study women. Then adjusting for gender is not necessary. Statistical analyses: I think you have done a case-control cohort study. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Per Henrik Zahl [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step.
|
| Revision 1 |
|
[EXSCINDED] PONE-D-19-15961R1 Risk of Major Autoimmune Diseases in Female Breast Cancer Patients: A Nationwide, Population-based Cohort Study PLOS ONE Dear Dr. Chien-Chih Chen, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Although the results of your study are considered important and the analyses basically appropriate, the presentation of the results of research on medical topics would benefit from revision. Please carefully consider the detailed and justified comments of the Reviewer. The revision of the text to them would clearly help making your results more understandable and convincing to the interested readers. We would appreciate receiving your revised manuscript by September 15th, 2019. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Pirkko L. Härkönen, M.D., Ph.D. Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #2: Partly ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #2: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #2: No ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #2: Abstract, lines 12-14: ….selected females diagnosed with breast cancer in the period 2007 to 2013 into a control group. Abstract, line 15. Delete sex. Not necessary to match on sex when you only study women. Abstract, lines 19-21. ….For SLE, the incidence rates were 2.3 (BC group) vs 10.0 (control group) per 100,000 women year; for RA rates were 19.3 (BC group) vs 42.7 (control group) per 100,000 women year; and for SS rates were 20.5 (BC group) vs 38.2 (control group) per 100,000 women year. Do not use 10 raised to the power of fifth in a medical journal. Abstract, page 3 , lines 1-4: After adjusting for potential confounders, the hazard ratio (HZ) with corresponding confidence interval (CI) for females breast cancer patients vs control group were 0.04 (95% CI: 0.01-0.24) for SLE; 0.03 (95% CI: 0.02-0.04) for RA; and 0.21 (95% CI: 0.09-0.48) for SS. Page 4, line 2: ….one of the most common…. Page 5, lines 13-14: The data set were extracted from the NHIRD database using data from the period 2003 to 2013. Page 6, lines 5 -6: …..,including data on both inpatients and outpatients,…. Page 6, lines 9-10:….,we selected the non-breast cancer control group from the LHID cohort. Page 7, line 13: delete leaving and write “emigration”. Is there any other way of leaving the database than emigration or death? Page 8, line 6: …,as the control group. Page 8, line 10: including 409,340 female non-breast cancer individuals before matching. Page 9, line 17…,by using Student’s t-test,….by using Pearson’s… Page 9, line18; confidence interval has been defined above. Page 10, line 2: HZ has been defined before. Page 10, lines 13-14: …. ,the incidence rate of SLE was 2.3 per 100,000 women years, the incidence rate of RA was 19.3 per 100,000 women years, the incidence rate of SS was 20.1 per 100,000 women years and the incidence rate of DMtis/PM was 2.3 per 100,000 women years. Page 10, lines 15-16: Do as above. Page 10, line 19: , the hazard ratio (HZ) with corresponding confidence interval (CI) for females breast cancer patients vs control group were 0.04 (95% CI: 0.01-0.24) for SLE; 0.03 (95% CI: 0.02-0.04) for RA; and 0.21 (95% CI: 0.09-0.48) for SS. Page 12, line 5: …had a significant lower risk…. Page 13, line 6. Do not use the word “claim data”. This is register data. Page 15, Table 1. Spelling error in the line under “Concomitant medication”. FiRst Page 15, Table 1: “Time to first SLE”… The number look like real numbers with percentage in parenthesis and not life times. Please correct or explain. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #2: Yes: Per-Henrik Zahl [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step.
|
| Revision 2 |
|
Risk of Major Autoimmune Diseases in Female Breast Cancer Patients: A Nationwide, Population-based Cohort Study PONE-D-19-15961R2 Dear Dr. Chien-Chih Chen, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Pirkko L. Härkönen, M.D., Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
|
PONE-D-19-15961R2 Risk of Major Autoimmune Diseases in Female Breast Cancer Patients: A Nationwide, Population-based Cohort Study Dear Dr. Chen: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Pirkko L. Härkönen Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .