Fig 1.
Geographical location of study sites.
Table 1.
Number of samples collected according the sites and the species.
Fig 2.
Phylogenetic tree based on a 410 bp fragment of the RNA-dependent RNA polymerase gene.
Phylogenetic trees A and B represent the Alphacoronavirus genus, while phylogenetic tree C represents the Betacoronavirus genus. The GenBank accession number, host, country of origin, and sample collection year are indicated for all reference sequences. Bat-host coronaviruses are marked in red for Chaerephon plicatus and in purple for Hipposideros sp.