Fig 1.
Plot of the first two principal component analysis (A) and the recent effective population size (Ne) trends over time (B) for Hanwoo and Angus breeds.
Fig 2.
ROH in Angus and Hanwoo. A: by length class frequency. B: by mean length.
Fig 3.
Manhattan plot of percentage of SNPs in ROH across the genome. A: in Hanwoo. B: in Angus.
Fig 4.
Manhattan plots with significance of iHS values above the threshold (red line). A: for Hanwoo. B: for Angus.
Fig 5.
Manhattan plots of the significance values between the populations. A: using XP-EHH. B: using Rsb.
Table 1.
Top five most significant genomic regions detected with iHS and ROH methods within breed.
Table 2.
Top five most significant genomic regions detected with Rsb and XP-EHH methods between breeds.
Fig 6.
Venn diagram with the number of overlapped significant genomic variants from all methods.