Table 1.
Cashew landrace collections across Kwale, Kilifi and Lamu counties in coastal Kenya.
Fig 1.
Distribution of marker data for reproducibility and call rate.
A. Reproducibility of SilicoDArT markers, B. Reproducibility of SNP markers. C. Call rates of SilicoDArT markers, D. Call rates of SNP markers.
Fig 2.
Distribution of PIC values of markers used for genomic studies in 92 cashew landrace genotypes.
A. silicoDArT markers and B. SNP markers.
Table 2.
Polymorphic distribution for both silicoDArT and SNP markers.
Table 3.
Statistics of the genetic diversity indices for SilicoDArT and SNP markers from cashew landraces along the Kenyan coast.
Fig 3.
Cashew landrace population structure determination based cross-entropy of Q Matrix for population admixture.
A. SilicoDArT markers, B. SNP markers.
Fig 4.
Population admixtures of 92 cashew landrace genotypes based on the Q matrix derived from 1,340 high-density silicoDArT markers.
Fig 5.
Population admixtures of 92 cashew landrace genotypes based on the Q matrix for 824 silicoDArT markers.
Table 4.
Population pair-wise fixation index of cashew landrace genotypes genotyped using silico DArT and SNPs markers.
Table 5.
Analysis of molecular variance in cashew landrace genotype collection based silicoDArT and SNP markers.
Fig 6.
Principal coordinate analysis of cashew landraces based on population structure via silicoDArT and SNP markers.
Fig 7.
Genetic clusters (red, blue and green clusters) among 92 cashew landrace genotypes based on A. silicoDArT and B. SNP markers.