Fig 1.
Schematic description of pyKleeBarcode pre-processing and steps.
Fig 2.
A. View of the structure matrix of the mammalian dataset and taxonomic structure of Mammalia. B. Phylogenetic tree structure of the taxonomic groups retrieved from NCBI taxonomy.
Fig 3.
A. Absolute Pearson correlation between indicator vectors obtained on the complete and the primate-only reference matrices. B. Absolute Pearson correlation between indicator vectors obtained on the complete and the no-Laurasiatheria reference matrices. C. Evolution of absolute Pearson correlation between indicator vectors obtained on the complete and a limited reference matrix with an increasing percentage of randomly missing sequences. Each boxplot corresponds to a single random replicate.
Fig 4.
Pearson correlation of the structure matrices with the reference one, grouped by main taxa.
A. comparison of the primates-only structure matrix and the reference one. B. comparison of the no-Laurasiatheria structure matrix and the reference one.