Fig 1.
Structure of the genome assembly.
Table 1.
Genome and gene comparison of Pandoraea sp. 892iso and other Pandoraea species.
Fig 2.
Venn diagram of genes common to Pandoraea sp. 892iso and the four other Pandoraea types.
Fig 3.
Phylogenetic analyses of the evolutionary relationships between Pandoraea sp. 892iso and Pandoraea types.
A neighbor-joining phylogenetic tree constructed based on single-copy genes common to these nine bacterial genomes. The neighbor-joining method was used in MEGA6, where a bootstrap test (1,000 replicates) is shown next to the branches.
Table 2.
Details of the four respective genes of Pandoraea sp. 892iso.
Fig 4.
Phylogenetic analyses of evolutionary relationships of ubiquitin genes among Pandoraea sp. 892iso and Pandoraea types.
A neighbor-joining phylogenetic tree constructed based on single-copy genes common to these nine bacterial genomes. The neighbor-joining method was used in MEGA6, where a bootstrap test (1,000 replicates) is shown next to the branches.
Table 3.
Average nucleotide identity (ANI) and average amino acid identity (AAI) analyses.
Genome comparisons of Pandoraea sp. 892iso and other Pandoraea-type species.
Fig 5.
Phylogenetic tree highlighting the position of Pandoraea sp. 892iso relative to the other Pandoraea species.
The tree was aligned with the characteristics of the rpoB gene (a) and MLSA (b) under the maximum likelihood (ML) criterion.
Table 4.
Pairwise comparison of Pandorarae sp. 892iso and Pandoraea species using the GGDC.
Fig 6.
Phylogenetic tree of ppnI and ppnR.
Table 5.
The identified ppnI and ppnR genes in Pandoraea sp. 892iso and nine Pandoraea species.
Fig 7.
Phylogenetic tree of OXA-159 genes.
The neighbor-joining method was used in MEGA7, where a bootstrap test (1,000 replicates) is shown next to the branch.
Table 6.
The identified genes with the function of OXA-159 in Pandoraea sp. 892iso and nine Pandoraea species.