Fig 1.
Pedigrees of the six partially inbred families obtained from self-pollination of four cacao clones (TSH-1188, CCN-51, PS-13.19, SIAL-169).
Fig 2.
Distribution of the genome-wide homozygosity of the 90 cacao clones at the 3,380 sampled SNP.
Table 1.
Summary of the SNP genotyping data for the individual offsprings in the six inbred families produced by self-fertilization of four cacao clones indicated as S0 parents (TSH-1188, PS-13.19, CCN-51 and SIAL-169).
Reported are the genotypic counts, the observed and expected homozygosities, standardized homozygosity and the chi-square test for departure from the average homozygosity by Mendelian expectation.
Table 2.
Summary of results of homozygosity of the six inbred cacao families produced by self-fertilization of cacao clones TSH-1188, PS-13.19, CCN-51 and SIAL-169.
RMSD: root-mean-square-deviation between the observed and Mendelian model expected homozygosity; t-test of the null hypothesis of no difference between the family mean observed and expected numbers of homozygous SNP counts.