Fig 1.
Overview of the MAECI assembly pipeline.
Fig 2.
A) Comparison of the performance of Canu, FlyeE, Wtdbg2, and MAECI in the assembly of 10 simulated ONT datasets of Enterobacter cloacae strain GGT036 (NZ_CP009756.1) before and after polishing with simulated NGS data. B) Box plots of coefficients of variation (CVs) of total length, GC content, mismatches per 100 kb, and indels per 100 kb from 10 datasets of each of the nine samples. * represents that the smaller CVs have been enlarged: the CVs of the total length were multiplied by 100, and the GC content was multiplied by 1,000.
Fig 3.
A) Performance comparison of Canu, FlyE, Wtdbg2 and MAECI on real datasets of A. faecalis PGB1 published by Lang et al. B) Comparison of MAECI and Trycycler on real ONT datasets of three strains published by Wick et al.
Table 1.
The simulated data statistics of three bacterial strains.