Table 1.
Summary of assembly statistics of the ginger transcriptome data.
Table 2.
Frequency distribution of the 12 most frequent EST-SSR repeat motifs in ginger.
Fig 1.
Distribution to different repeat type classes in unigenes.
Fig 2.
Distribution to different repeat type classes in CDS.
Fig 3.
Gene Ontology classification of unigenes.
Unigenes were assigned to three categories: cellular component, molecular function, and biological process.
Fig 4.
Validation of SSR markers in germplasm accessions of ginger.
A. Gel image of PCR amplification of SSR marker ZOSSR25 on 48 germplasm accessions of ginger as captured on QIAxcel ScreenGel software. Numbers refer to accession numbers as indicated in S1 Table. The last lane is DNA molecular weight standard 50-1000bp v2.0 Qx DNA size marker. B. A representative electropherogram showing different allele sizes (sample G04 B26, variety Athira).
Table 3.
Characteristics of 12 selected primers designed for analysing genetic diversity of ginger and PIC value.
Fig 5.
Genetic relationship of ginger accessions as revealed by SSR markers.
Dendrogram of 48 ginger genotypes revealed by cluster analysis of genetic similarity estimates generated by Jaccard coefficient based on 12 EST-SSR markers.
Fig 6.
Principle component analysis (PCA) of ginger genotypes based on 12 polymorphic EST-SSR markers.