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Fig 1.

An example of EM images.

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Fig 1 Expand

Fig 2.

An example of 21 EM classes in EMDS-5.

Single-object GT images (SGI), Multi-object GT images (MGI).

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Table 1.

Basic information of 21 EM classes in EMDS-5.

Number of original images (NoOI), Number of single-object GT images (NoSGI), Number of multi-object GT images (NoMGI), Visible characteristics (VC).

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Fig 3.

An example of different noisy EM images using EMDS-5 images.

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Table 2.

A comparison of similarities between denoised images and original image using EMDS-5.

(In [%].).

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Table 3.

A comparison of variances between denoised images and original image using EMDS-5.

(In [%].).

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Table 4.

A comparison of PSNR between denoised images and original image using EMDS-5.

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Table 5.

A comparison of SSIM between denoised images and original image using EMDS-5.

(In [%].).

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Fig 4.

An example of seven edge detection results using EMDS-5 images.

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Table 6.

A comparison of edge detection methods using EMDS-5.

Evaluation index (EI), Operator type (OT).

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Fig 5.

An example of different single-object segmentation results using EMDS-5 images.

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Table 7.

The image segmentation evaluation metrics used in this paper and their definitions.

TP (True Positive), FN (False Negative), FP (False Positive).

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Table 8.

A comparison of single-object segmentation methods using EMDS-5.

Image segmentation methods (ISM), Evaluation index (EI), Watershed algorithm (WA), Otsu thresholding (OT), Region growing (RG). (In [%].).

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Table 8 Expand

Fig 6.

The structure of U-Net.

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Fig 6 Expand

Fig 7.

An example of different multi-object segmentation results using EMDS-5.

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Table 9.

A comparison of multi-object segmentation methods using EMDS-5.

Image segmentation methods (ISM), Evaluation index (EI). (In [%].).

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Table 9 Expand

Fig 8.

An example of localized EMs by GT images.

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Table 10.

Classification accuracy of single-object features by RBFSVM using EMDS-5. Feature type (FT), Accuracy (Acc), Geometric features (Geo), Hu moments (Hu).

(In [%].).

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Table 11.

Classification accuracy of multi-object features by RBFSVM using EMDS-5. F Feature type (FT), Accuracy (Acc), Geometric features (Geo), Hu moments (Hu).

(In [%].).

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Table 12.

The parameters of four SVM classifiers for EMDS-5 image classification (supported by LIBSVM).

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Table 13.

A comparison of EM image classification results using EMDS-5.

Accuracy (Acc), nTree (nT), VGG16 (Train: Validation: Test = 1: 1: 2) is VGG16: 1: 1: 2, VGG16 (Train: Validation: Test = 1: 2: 1) is VGG16: 1: 2: 1, Inception-V3 (Train: Validation: Test = 1: 1: 2) is I-V3: 1: 1: 2, Inception-V3 (Train: Validation: Test = 1: 2: 1) is I-V3: 1: 2: 1. (In [%].).

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Fig 9.

An example of image retrieval results with GLCM using EMDS-5.

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Fig 10.

A comparison of image retrieval results with four texture features using EMDS-5.

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Fig 11.

An example of image retrieval results based on VGG16 feature using EMDS-5.

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Fig 12.

A comparison of image retrieval results with two deep learning features using EMDS-5.

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