Fig 1.
(A) Systematic workflow adopted to annotate potential lncRNAs of flowering plants available from the 1KP project. (B) Length-wise distribution of AlnC annotated lncRNAs across clades. (C) Pie chart represents the percentage of lncRNA entries in AlnC. (D) Percentage composition of AU content in protein-coding transcripts and lncRNAs in AlnC.
Fig 2.
Circos plot showing significant BLAST hits of AlnC lncRNAs to, (A) NONCODE lncRNAs (only top 200 hits shown in the image), and (B) PLncDB (experimentally validated lncRNAs).
Fig 3.
Correlation in total transcripts, coding transcripts and AlnC lncRNAs across clades.
The bubble size represents the size of 1KP total transcripts, coding transcripts and AlnC annotated lncRNAs in (A), (B) and (C), respectively.
Table 1.
Summary of annotated lncRNAs across higher-level clades in AlnC database.
Fig 4.
Screenshots of AlnC web interface.
(A) Interface of simple search and advanced search modules. (B) Results page showing a table view of all lncRNA entries of the plant species Aextoxicon punctatum. (C) Sequence features including primary sequence information, secondary structure and possible sORFs as well peptides are displayed for lncRNA entry AlnC_6143890. (D) Percentage composition of AU content lncRNAs relative to mRNAs. (E) Pie chart representation of length-wise distribution of Aextoxicon punctatum lncRNAs and mRNAs.