Table 1.
WGS characterization of K. pneumoniae isolates (n = 32), carbapenem-resistance and wzi typing.
Fig 1.
cgMLST minimum spanning tree of 32 Slovenian K. pneumoniae isolates, calculated in Ridom SeqSphere and based on comparing 2365 alleles, ignoring pairwise missing values.
Each node is labelled with an ST and carbapenemase gene. Grey nodes represent isolates not related to the outbreak. Red nodes are epidemiologically confirmed outbreak isolates. The yellow node is an additionally determined outbreak isolate by WGS. Green node represents newly determined ST. Lines indicate the number of allelic differences.
Fig 2.
BRIG-generated schematic representation of the plasmid encoding blaOXA-48 (marked in blue), sequenced using hybrid assemblies of five Klebsiella pneumoniae isolates and a reference plasmid from Kp11978 isolate [28,29].