Fig 1.
Geographical distribution of indicine breeds in Pakistan.
Table 1.
Summary of sequencing data.
Fig 2.
Total and private SNPs count in different breeds of Pakistan.
Fig 3.
All InDels length distribution.
Fig 4.
Venn diagram showing coding region SNPs based comparison of five important Pakistani indicine cattle breeds.
Table 2.
Annotation of SNPs detected in all sequenced Pakistani Bos indicus breeds.
Table 3.
Annotation of InDels detected in all sequenced Pakistani Bos indicus breeds.
Fig 5.
InDels length distribution found in coding regions.
Table 4.
Gene ontology (GO) based on known genes harboring high or moderate impact SNPs.
Table 5.
KEGG pathways enriched (FDR<0.10) in Sahiwal, Red Sindhi, Tharparkar, Cholistani, Achai, Bhagnari and Lohani indicine breeds from Pakistan.